Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38760 361 / 3e-125 ANN3, ANNAT3 annexin 3 (.1) AT5G10230 272 / 2e-90 ANN7, ANNAT7 annexin 7 (.1) AT1G35720 267 / 2e-88 ATOXY5, ANNAT1 annexin 1 (.1) AT5G65020 267 / 3e-88 ANNAT2 annexin 2 (.1.2) AT5G10220 259 / 2e-85 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G12380 252 / 2e-82 ANNAT8 annexin 8 (.1) AT1G68090 188 / 1e-57 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT2G38750 150 / 8e-43 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039547 [exp] 499 / 9e-180 AT2G38760 271 / 4e-90 annexin 3 (.1) Lus10024172 [exp] 460 / 2e-164 AT2G38760 349 / 1e-120 annexin 3 (.1) Lus10039550 [exp] 426 / 3e-150 AT2G38760 323 / 2e-109 annexin 3 (.1) Lus10008227 [exp] 265 / 1e-87 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10003611 [exp] 263 / 8e-87 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10041140 [exp] 259 / 5e-85 AT1G35720 414 / 2e-146 annexin 1 (.1) Lus10036470 [exp] 251 / 4e-82 AT1G35720 406 / 3e-143 annexin 1 (.1) Lus10024054 [exp] 251 / 5e-82 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10041696 [exp] 233 / 6e-75 AT5G65020 395 / 2e-138 annexin 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024800 [exp] 454 / 9e-162 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.002G095600 [exp] 277 / 3e-92 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.007G092500 [exp] 274 / 4e-91 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.003G200700 [exp] 259 / 2e-85 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.005G075900 [exp] 259 / 2e-85 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.001G277500 [exp] 246 / 4e-80 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.012G041900 [exp] 199 / 6e-62 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 193 / 1e-59 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.008G139500 [exp] 180 / 1e-54 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.001G024900 [exp] 178 / 8e-54 AT2G38750 371 / 2e-129 annexin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10024174 pacid=23141452 polypeptide=Lus10024174 locus=Lus10024174.g ID=Lus10024174.BGIv1.0 annot-version=v1.0 ATGGCCACATTCAGAGTACCGGATGCCGTTCCTTCTGCAACCCAAGATAGTGAACGACTCAGAAAGGCTTTCAAAGGAGTAGGGACTGATGAGAAGGCAA CCATATGGATCCTTGGGCACCGAAATGCATCCCAGAGGAGGATGATTAGAGACACTTACCACCAGCTTTACAAAGAATCCCTTATAGATCGCCTCCATTC AGAGCTCTCCAGAGATTTCAGAAGAGCGATGATTCTGTGGACATATGACCCGGCAGAGAGGGATGCAGTGCTGGCCAACAAAGCCTTCACAGGAAAGAAG CAAGGATTCAAGCAGCTCCAATCTATAGTTGAGATTGCATGCGCCACTTCCCCTCATCATCTGCAATTGGTGAAGCACACTTACTGTACCATTTTTGATT CTTCGCTTGAAGAGGATATTGCTGTCCACGTCTCCTTCCCCATCAGAAAGCTTCTCGTGGGTTTGGTGCGGTCTTACAGGTATGACAAAGAACTGGTGGA TATGAACTTTGCAAACATGGAAGCATCTAAATTACACGAAGCCATCAAGATGAAACAGTTATATCATGATGATGTGATCTACATTCTCAGTACTAGGAAT GTGCACCAGCTCAGAACAACTTTCGAGCTGTATAAGCAGCGCTTTGGGAATTCAATCGACCAGGATCTGAAGGACTATGGAGAGGGTGATATGGAGAGCC TTTTAAGGGCAGTGGTTCAGTGCATTCATTGCCCTGCAAAACACTTTGCTGAGGTCATCAAAACATCTGTTAATGGGCTTGGAACCGACGAAAAGTCACT GACTAGGGCAATAGTGACTCGAGCTGAGATTGATCTGCTGAAAATCAGAGAAGAGTATACGAACCTGTATGGAACCCAGGTGGAGGATGCTATAACTGGA GACACTTCAGGGGACTACAAAAATTTGTTGAAGACTTTACTTGGTGCCAGAGTCTGA
AA sequence Show only first row Show all	>Lus10024174 pacid=23141452 polypeptide=Lus10024174 locus=Lus10024174.g ID=Lus10024174.BGIv1.0 annot-version=v1.0 MATFRVPDAVPSATQDSERLRKAFKGVGTDEKATIWILGHRNASQRRMIRDTYHQLYKESLIDRLHSELSRDFRRAMILWTYDPAERDAVLANKAFTGKK QGFKQLQSIVEIACATSPHHLQLVKHTYCTIFDSSLEEDIAVHVSFPIRKLLVGLVRSYRYDKELVDMNFANMEASKLHEAIKMKQLYHDDVIYILSTRN VHQLRTTFELYKQRFGNSIDQDLKDYGEGDMESLLRAVVQCIHCPAKHFAEVIKTSVNGLGTDEKSLTRAIVTRAEIDLLKIREEYTNLYGTQVEDAITG DTSGDYKNLLKTLLGARV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024174 [exp]	0	1
AT2G28780			unknown protein		Lus10007010 [exp]	3.0	0.9058
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10033999 [exp]	3.5	0.9170
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10002750 [exp]	4.7	0.9096
AT3G19340			Protein of unknown function (D...		Lus10012581 [exp]	7.5	0.8863
AT1G16750			Protein of unknown function, D...		Lus10039917 [exp]	10.3	0.8298
AT3G08990			Yippee family putative zinc-bi...		Lus10035531 [exp]	11.0	0.8246
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029319 [exp]	12.5	0.9029
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10037685 [exp]	15.1	0.8795
AT3G26590			MATE efflux family protein (.1...		Lus10036851 [exp]	15.8	0.9019
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	17.7	0.8711

Compare expression of checked genes

Lus10024174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.