Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38800 115 / 9e-27 Plant calmodulin-binding protein-related (.1) AT3G54570 95 / 1e-20 Plant calmodulin-binding protein-related (.1) AT5G04020 83 / 3e-16 calmodulin binding (.1) AT5G39380 44 / 0.0003 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039544 [exp] 923 / 0 AT3G54570 121 / 9e-29 Plant calmodulin-binding protein-related (.1) Lus10035417 [exp] 88 / 1e-17 AT5G04020 129 / 3e-30 calmodulin binding (.1) Lus10031023 [exp] 82 / 7e-16 AT5G04020 127 / 9e-30 calmodulin binding (.1) Lus10034717 [exp] 43 / 0.0004 AT5G39380 86 / 1e-19 Plant calmodulin-binding protein-related (.1) Lus10030701 [exp] 44 / 0.0006 AT5G39380 132 / 6e-33 Plant calmodulin-binding protein-related (.1) Lus10021647 [exp] 43 / 0.001 AT5G15430 95 / 5e-20 Plant calmodulin-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024100 [exp] 144 / 2e-35 AT2G38800 134 / 2e-32 Plant calmodulin-binding protein-related (.1) Potri.003G201400 [exp] 134 / 2e-32 AT2G38800 145 / 4e-36 Plant calmodulin-binding protein-related (.1) Potri.006G043900 [exp] 102 / 3e-22 AT5G04020 145 / 6e-35 calmodulin binding (.1) Potri.016G041100 [exp] 95 / 9e-20 AT5G04020 114 / 4e-25 calmodulin binding (.1) Potri.015G049600 [exp] 46 / 9e-05 AT5G39380 94 / 2e-20 Plant calmodulin-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [flax] [poplar] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024175 pacid=23141509 polypeptide=Lus10024175 locus=Lus10024175.g ID=Lus10024175.BGIv1.0 annot-version=v1.0 ATGGTTCAGAGCAGCAAGCTTGGGATAATCCCAATCCAATCTCATCATCATCATCCTCCTCCACAAAACCTGAAGAGCAAGAATCCAACTCCTGTATATC ATCATCAGCTTCATGGGCTTCCTGCAGAACTGACTAAGAAAATGAAACGATCCGGTTCTGCCAAGAAAGCTTCAGACTTCCACAAGATATCACAAAACCA GAGGAAACCCACGTCTGTGGCGACTTCTGCTCCTCCGCCCTCCACTCCACAGAAGTCGCCGCCGAATTACATGAAGTCCACCTCCAGCTCAGAGGCCAGG AAGGACAAAGACAAGGAGAAGGAGCGTTCCCCTGTAAGCAAGTCCTTTCATCTAGATAGAAAACATCCCATCAACTCTGCTTCTTCCCCTGCTTCTTCTT CCGGTAAACGCAAGCCGTCGGCGGCGGTGGGGGATGAAGGGAGGAGTGCGGCCTTGAAGAAGAAGAAGAAGACAACGGCAAGAGCTCTGACCAAAGTTCC GAGCTTTAAGAAGTGTTCTTCGAAAGTGGGTCCCAAGAACGTGATGAGATCGACCTGCTCTTCGACGATGAAGGATTCCAAGTTCCCTCCTTACCTTGTG CTTGACCATGGAGCTACAGAAGCTCAAGGTACTTCGGCTATGAAGGTCTGTCCCTACACTTACTGCTCTCTGAATGGCCATCACCACCGTCAGCCAGATC TCCCGCCGTTGAAATGCTTCTTGAAGACCAAGCGCCGGTCTCTCAAGGCCCAGAAAAGTGTCAAGTTGGGAGGTTCTCTGTCTCCCAGGAGCAGACCAGT TGCCGGTGAAATTGTGGGGGTTTCTGATGTTGATCAAGCGGATTTCTTTGTTGAATTTTTCACAAAAGAGGCAGATAATCATAATAATGATGCTCCAACA ATGGAAGATGTGAAGCTTGTTGAAGAACAGGACCCGTTGGAGAGTGAATTTGAGCGAGACAACATGAACCGGTTTGGGGACATGAGTAGCTCTGCTGATG AAATGGTTGAGATCAGTAGCTTTGATGGTGGAATTGAAGATGGAAGTATGGAGGAAGATGATGAGGAAGACGACCAGAGTTCTGAAGAAGGTACAGAAAT GGAGTGGGTACAAGGCCTGGATTCTTCATCTTCTCAAGTTGGTGTGGAAGGTGAGCAGTTATTGGAGTTTGAGAAGCATGAGATGGTCAAATCAAATGAC ATTGCCAGCAGCAGCTGTACTGAAGAGGTTCTCACAAAGGAGTTGCTTCGTGATCTGTTTGAGGAAGAAACTGAAGGTGCTACTTCTTCTGCAACAAGTG AATTTGGTGGTAATGATGGATTTCAGAATTGGGAGGATGATGATGATGCATTTCAGAAGCTGGAAGAAGAAAAAGGCACTGATGGCGAGACATGTTCAGT GTCAAACTTAGGTCAGACGGATATGGAAGTTTTCAGTGTGGATGAGGTTAATGAGATCTTTGAGGCGGATATCGACTCGACTACTGAATACCTTGTCAAG GAAGGTGATGACATGGTTGAGCCTGGAAATGTTATTGACATACAAACTTCAGAAAATCAAGACAAGACCAGGACTCGAAATGTCATGAATCCTGATGCAG AAAAGCATTGCAGCAGCGACAAGAAATGGAAGATAGGGTCCGGGAGAGGAATGGAGGAGATGGAAGGAAATGAGAGGGAGTTCAATCCTAAAGATCCAAA CTTTCTTCCTGTGATAGCAGACCCAGAGGGGGAAAAAGTTGATCTGAAGCATCAGATGATGGATGAAAGAAGGAACTCAGAGGAATGGATGATTGATCAT GCACTCCAGCAAACTGTCACCAAGCTAGCTTCAGCTAGGAAAAGGAAAGTCGCATTACTTGTTGAAGCTTTCGAAACAGTATCTCCTAGCACTATACCCA AAATCGATCCTCGTATCATCAGGCATCCAGCTGCATCCCCCATTTTCTCTCCCACTTCCAGGCAGATTCAGGCTTGTGGTTGA
AA sequence Show only first row Show all	>Lus10024175 pacid=23141509 polypeptide=Lus10024175 locus=Lus10024175.g ID=Lus10024175.BGIv1.0 annot-version=v1.0 MVQSSKLGIIPIQSHHHHPPPQNLKSKNPTPVYHHQLHGLPAELTKKMKRSGSAKKASDFHKISQNQRKPTSVATSAPPPSTPQKSPPNYMKSTSSSEAR KDKDKEKERSPVSKSFHLDRKHPINSASSPASSSGKRKPSAAVGDEGRSAALKKKKKTTARALTKVPSFKKCSSKVGPKNVMRSTCSSTMKDSKFPPYLV LDHGATEAQGTSAMKVCPYTYCSLNGHHHRQPDLPPLKCFLKTKRRSLKAQKSVKLGGSLSPRSRPVAGEIVGVSDVDQADFFVEFFTKEADNHNNDAPT MEDVKLVEEQDPLESEFERDNMNRFGDMSSSADEMVEISSFDGGIEDGSMEEDDEEDDQSSEEGTEMEWVQGLDSSSSQVGVEGEQLLEFEKHEMVKSND IASSSCTEEVLTKELLRDLFEEETEGATSSATSEFGGNDGFQNWEDDDDAFQKLEEEKGTDGETCSVSNLGQTDMEVFSVDEVNEIFEADIDSTTEYLVK EGDDMVEPGNVIDIQTSENQDKTRTRNVMNPDAEKHCSSDKKWKIGSGRGMEEMEGNEREFNPKDPNFLPVIADPEGEKVDLKHQMMDERRNSEEWMIDH ALQQTVTKLASARKRKVALLVEAFETVSPSTIPKIDPRIIRHPAASPIFSPTSRQIQACG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54570			Plant calmodulin-binding prote...		Lus10024175 [exp]	0	1
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Lus10005769 [exp]	10.4	0.8582
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	11.1	0.8397
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Lus10014480 [exp]	15.9	0.8709
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10035538 [exp]	19.4	0.8709
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Lus10012290 [exp]	31.7	0.8482
AT5G08350			GRAM domain-containing protein...		Lus10010167 [exp]	32.9	0.8029
AT5G40670			PQ-loop repeat family protein ...		Lus10032114 [exp]	37.7	0.8489
AT5G20885			RING/U-box superfamily protein...		Lus10043353 [exp]	39.7	0.8480
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015886 [exp]	146.0	0.8212
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10033083 [exp]	148.0	0.8327

Compare expression of checked genes

Lus10024175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.