Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29050 342 / 1e-115 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 330 / 6e-111 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT2G42570 304 / 6e-101 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT3G14850 301 / 6e-100 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT2G31110 299 / 4e-99 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G78710 298 / 1e-98 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT2G30900 296 / 6e-98 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT5G58600 289 / 1e-94 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 247 / 3e-78 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT3G12060 233 / 5e-71 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019774 [exp] 471 / 2e-166 AT1G29050 361 / 2e-123 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10039559 [exp] 417 / 2e-145 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10039557 [exp] 402 / 3e-139 AT1G29050 351 / 2e-119 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 326 / 2e-109 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10000988 [exp] 325 / 3e-109 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 311 / 9e-104 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10002198 [exp] 311 / 1e-103 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10033617 [exp] 296 / 9e-98 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10009209 [exp] 295 / 2e-97 AT3G14850 423 / 2e-148 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023900 [exp] 403 / 1e-139 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201700 [exp] 391 / 3e-135 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 385 / 4e-133 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G064700 [exp] 326 / 9e-110 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 322 / 3e-108 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.019G090200 [exp] 315 / 2e-105 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.004G135600 [exp] 309 / 4e-103 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Potri.011G106200 [exp] 309 / 7e-103 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 308 / 7e-103 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.013G118500 [exp] 303 / 2e-100 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10024176 pacid=23141453 polypeptide=Lus10024176 locus=Lus10024176.g ID=Lus10024176.BGIv1.0 annot-version=v1.0 ATGCAGCCTTGCACATCAACAAGGCCCTTATGTGTTCTTCTCCTCCTTCTCCTCACCGACGTTTTCGTTGCCGACTGGTGGTGGTCTTTGAATCTAGCCG ATGCCGAAGATGCCATTGAAGAGACTTACTTTAACAAACAACACAGTCAGAGGAGTAGCAGTATCTGTAATAACAATAATAATTTGTATGAAGGAAGCTG GGTGTACGAGGAGACTTACGAGCCTCCCTATAGTTCATCTTCTTGTCCTTTCATTGCCAAGGAATTCGATTGCTTCAAGTTCGGGCGTACTGATCACAAG TATCTTCACTATCGTTGGCAGCCTGCTGGTGGCTGTAATCTACCCAGATTCGACGGGAAGAAGTTATTAAGGAAGATGGAAGGGAAGAAGATCATGTTTG TAGGCGACTCGCTGAGTATGAATCAATACGACTCCTTTGTGTGCCTTCTTCATGCATCCGTTCCAAATTCGACGACCACTCGTGAGTTTCAACCCGCGTC AACTGTTACATTTCAGGAATATGGAGTATCAATAATGTTGTTTACAAGTCATTACTTGGTTGATGTAGAGCAAGAAGAGATGGGCAGCAGGGTGTTGAAG CTTGATTCCATTATTAGTAATGGCAGTAGCCTGTGGAAGAAGATGGATTTTCTCGTTTTCAACACTTGGGCTTGGTGGTATCGGACTGGACCAACTAAAG GATGGGATTATGTTCAAGATGGTGCGATGGTGTTCAAGGACATGGATCGAATGGTTGCATTCAAGAAAGCCTTAACCACATGGGCCAGATGGGTAGATTC AAATGTGGACAGTTCTAAAACTACTATTCTTTTTCAAGGAGCATCCCCTTCTCATTACAATGGCACTGATTGGGGGAAACCAGAAGTGAGAAACTGCTCT CAGGAGACGGAACCTATACAGGGATCGAGCGCCGATGTTGGTGGCATCGTATCGTTTGCATTACAGGTACAAGAAGAGATCATCAAGACTATGAATACTC CAGTTAAGTTTCTCAATATAACAAGACTTTCGCGGCTAAGAAAGGACGGACATCCATCTACTCATGGCGGACTTGGAAGGTTGGATTGCACTCACTGGTG TATAGCAGGAGTGCCGGATACTTGGAACGAACTTCTCTACGCAACTCTTGTATACCAAGGTTTGAAGCCTCCTTCGTTTTGCCTATGTAGGTAG
AA sequence Show only first row Show all	>Lus10024176 pacid=23141453 polypeptide=Lus10024176 locus=Lus10024176.g ID=Lus10024176.BGIv1.0 annot-version=v1.0 MQPCTSTRPLCVLLLLLLTDVFVADWWWSLNLADAEDAIEETYFNKQHSQRSSSICNNNNNLYEGSWVYEETYEPPYSSSSCPFIAKEFDCFKFGRTDHK YLHYRWQPAGGCNLPRFDGKKLLRKMEGKKIMFVGDSLSMNQYDSFVCLLHASVPNSTTTREFQPASTVTFQEYGVSIMLFTSHYLVDVEQEEMGSRVLK LDSIISNGSSLWKKMDFLVFNTWAWWYRTGPTKGWDYVQDGAMVFKDMDRMVAFKKALTTWARWVDSNVDSSKTTILFQGASPSHYNGTDWGKPEVRNCS QETEPIQGSSADVGGIVSFALQVQEEIIKTMNTPVKFLNITRLSRLRKDGHPSTHGGLGRLDCTHWCIAGVPDTWNELLYATLVYQGLKPPSFCLCR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10024176 [exp]	0	1
AT1G54680			unknown protein		Lus10033821 [exp]	1.7	0.9451
					Lus10029627 [exp]	2.0	0.9031
AT1G54680			unknown protein		Lus10018965 [exp]	2.4	0.9399
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	2.4	0.9323
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10038354 [exp]	4.2	0.8936
AT1G53440			Leucine-rich repeat transmembr...		Lus10041937 [exp]	6.5	0.8464
AT5G02180			Transmembrane amino acid trans...		Lus10024374 [exp]	7.5	0.8749
AT5G03260		LAC11	laccase 11 (.1)		Lus10013800 [exp]	9.1	0.8172
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10026513 [exp]	11.0	0.8589
AT2G38570			unknown protein		Lus10022733 [exp]	12.3	0.8494

Compare expression of checked genes

Lus10024176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.