Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67140 273 / 1e-93 F-box/RNI-like superfamily protein (.1) AT2G25490 64 / 8e-12 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G21410 62 / 3e-11 SKP2A F-box/RNI-like superfamily protein (.1) AT5G25350 57 / 1e-09 EBF2 EIN3-binding F box protein 2 (.1) AT5G23340 52 / 9e-08 RNI-like superfamily protein (.1) AT5G01720 50 / 3e-07 RNI-like superfamily protein (.1) AT5G49980 49 / 6e-07 AFB5 auxin F-box protein 5 (.1) AT5G27920 49 / 1e-06 F-box family protein (.1) AT1G77000 48 / 1e-06 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT4G15475 48 / 2e-06 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039564 [exp] 384 / 2e-137 AT5G67140 317 / 1e-110 F-box/RNI-like superfamily protein (.1) Lus10012294 [exp] 64 / 1e-11 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1) Lus10015980 [exp] 57 / 2e-09 AT3G58530 442 / 4e-156 RNI-like superfamily protein (.1) Lus10002014 [exp] 56 / 3e-09 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 56 / 5e-09 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 54 / 2e-08 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10040998 [exp] 52 / 7e-08 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10002165 [exp] 52 / 8e-08 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10013444 [exp] 52 / 8e-08 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G140000 [exp] 289 / 6e-100 AT5G67140 334 / 2e-117 F-box/RNI-like superfamily protein (.1) Potri.007G045601 [exp] 98 / 1e-26 AT5G67140 151 / 2e-47 F-box/RNI-like superfamily protein (.1) Potri.005G185700 [exp] 57 / 2e-09 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.002G074700 [exp] 56 / 5e-09 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.006G254100 [exp] 54 / 1e-08 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.003G179100 [exp] 54 / 2e-08 AT1G80630 494 / 1e-169 RNI-like superfamily protein (.1) Potri.006G195800 [exp] 54 / 2e-08 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 53 / 4e-08 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 52 / 6e-08 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 52 / 8e-08 AT5G27920 631 / 0.0 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024178 pacid=23141574 polypeptide=Lus10024178 locus=Lus10024178.g ID=Lus10024178.BGIv1.0 annot-version=v1.0 ATGTTTCTGAATCTATCGGCGAGCGGGGTTTGCAGGAAATGGAGGGAAGGAGTGAAGCAGTCAATCGGAAGAAGAGAAAGATTGAGCTTTGCTGGGTGGA AGATGGATGGTCACTCCACCTCCCGCCTCCTCCATCTCGCCTTCTCCCTCAAACAACTTGACATATCAAGAAGCAGGTGGGGTTGCCAAATAACAGACGA CGGACTTGACAGAATCTCTTCTGCATACTGCATTCCCAACCTTACTTCTATTTCCCTTTGGGGCATCACCGGCATCACCGATCTCGGCGTTGTTCACCTG GTATCAAAAGCCATCTCCATCCAGCATCTCAACATTGGCGGTACCTTCACCACTGACGACTCCTTATTTGCAATTGCCGATAGCTGTCCCAATTTGAAGA GCATTGTGTTGTGGAGCTGTCGTCATGTGACTGAGGTTGGACTTTCTAGCCTTGTAAATAAATGCCAGAAACTCAAGGTGATCGATGTGTGGGGTACCAG AATTCCAGTCCACTGCTTCATTGCTCTGCTCGCCATTAGCCCAGCTCTTCAGATTAAGGCTCCTGGTATACTGGCAATCGATACTGGGGCATCCTCCGCT CCAGTCCTTGTGCCTGTTGCTTGA
AA sequence Show only first row Show all	>Lus10024178 pacid=23141574 polypeptide=Lus10024178 locus=Lus10024178.g ID=Lus10024178.BGIv1.0 annot-version=v1.0 MFLNLSASGVCRKWREGVKQSIGRRERLSFAGWKMDGHSTSRLLHLAFSLKQLDISRSRWGCQITDDGLDRISSAYCIPNLTSISLWGITGITDLGVVHL VSKAISIQHLNIGGTFTTDDSLFAIADSCPNLKSIVLWSCRHVTEVGLSSLVNKCQKLKVIDVWGTRIPVHCFIALLAISPALQIKAPGILAIDTGASSA PVLVPVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67140			F-box/RNI-like superfamily pro...		Lus10024178 [exp]	0	1
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004028 [exp]	5.0	0.8292
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10034598 [exp]	9.9	0.8133
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	11.2	0.8169
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	11.5	0.8187
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10021462 [exp]	11.7	0.8150
					Lus10000768 [exp]	12.2	0.7923
AT4G09760			Protein kinase superfamily pro...		Lus10028696 [exp]	14.5	0.7937
AT5G64500			Major facilitator superfamily ...		Lus10002935 [exp]	15.6	0.8172
AT4G30780			unknown protein		Lus10035819 [exp]	17.3	0.7982
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10003178 [exp]	17.4	0.7907

Compare expression of checked genes

Lus10024178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.