Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50400 329 / 1e-104 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT1G13750 306 / 1e-95 Purple acid phosphatases superfamily protein (.1) AT4G24890 300 / 4e-93 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13900 220 / 5e-63 Purple acid phosphatases superfamily protein (.1) AT2G03450 214 / 1e-60 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT3G52780 118 / 2e-28 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G52810 116 / 1e-27 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT4G13700 114 / 9e-27 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52820 111 / 4e-26 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G20500 110 / 7e-26 ATPAP18, PAP18 purple acid phosphatase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039565 [exp] 1107 / 0 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019772 [exp] 876 / 0 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 852 / 0 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10019771 [exp] 788 / 0 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037079 [exp] 305 / 2e-95 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10036904 [exp] 304 / 6e-95 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10012144 [exp] 291 / 4e-90 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10004661 [exp] 230 / 2e-66 AT1G13900 860 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10026652 [exp] 227 / 3e-65 AT1G13900 875 / 0.0 Purple acid phosphatases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023400 [exp] 847 / 0 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.003G202200 [exp] 840 / 0 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158250 [exp] 317 / 9e-100 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.012G097400 [exp] 311 / 2e-97 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.015G095900 [exp] 298 / 1e-92 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158400 [exp] 291 / 5e-90 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 286 / 5e-88 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G160500 [exp] 227 / 1e-65 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.001G423700 [exp] 120 / 6e-29 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.011G138200 [exp] 117 / 7e-28 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10024179 pacid=23141524 polypeptide=Lus10024179 locus=Lus10024179.g ID=Lus10024179.BGIv1.0 annot-version=v1.0 ATGGAGCTGCTCCGACTTTACCTTCTTCTCATTGCAGTTGCAGCCGTTGTCCTTCATTCTTCTGCAGCTTCGTCGTCAGCGCATTCCTCCTTGCATCCCA CGGTGGCTTACTCCATGATGGAGCACCGTGACCACACTGGGATTTCGGATTTTCGAGTACTGAACAGGAGGTCTCTGGGTCAGTGTCCTGACCCGAATCC TTACCTGGACATAACGGTCAGCACCAACCAGCTGCTGGCCGACGAGGAGTACGTCAAGGTTACCGTTAGCGGGGTTCTGATCCCCTCCGAATTGGATTGG GTGGGAATGATATCTCCTTCCGATTCTGATGTGTCGGCTTGTCCATTGAAGAAAGCAGAGTACCTTCAGACGGGAGACCTTGCACATCTTCCTCTTCTCT GCCATTATCCTGTTAAGGGACAGATGGTGAGCAGTGATGGAGATTACCTGGGATGCAAGAAAAAGCAGTGCCAAAAGTCAAAGGGCCCCACCTGCAGTGT CTCCACTTGTAATGCCACCATAACATTCCACGTCGTCAACTTCAGAACTGACGTGGAATTCGTTTTCTTCACCGGCGGCTTCGACGCACCCTGGCGGCTT CGACGCACCCTGTATACTCGCAAGATCCGGACCGTTGAAATTCGCCAATCCAAACCAGCCCCTCTATTCTCACATCTCCGCCGTCGATTCATCAGCAACT TCCTCAAGTATGGTGATGGCCAAACCATTCATTCAGAAGCCACTACATTTACTCAGGATGACATGTGCTCCTCTCTTCTTCCAAGTCCAGCCAAGGACTT TGGATGGCATGACCCTGGACACATCCACTCAGCAATCATGACTGGCCTCCAACCTTCAAACACCTACTCCTTCAAATATGGAAGTGATTCAGTAGGGTGG AGTGAAGAGATGAAGTTCAAGACACCACCAGCCGGAGGATCAGATGAAGTGAGGTTTCTAGCTTACGGTGACATGGGGAAGGCCCCTCTTGACCCTTCTG CTGAACACTATATCCAGCCAGGATCCCTTTCCGTGGTCAAGGCCATGACTAATGAAGTCGAATCGGGGAACGTAGATTCCATCTTCCACATTGGAGATAT CAGCTACGCCACTGGATTCCTCGTCGAATGGGACTACTTCCTTCAGCTTATTAGCCCCATGGCTTCCCAGGTCTCCTACATGACTGCGATAGGAAACCAC GAGAGGGATTATATTAATACTGGATCGGTTTATGGTACACCTGACTCTGGTGGGGAATGTGGAGTTCCTTATGAGACATATTTCCCAATGCCGACCTCGG AGAAGGACAAGCCATGGTATTCTATTGAACAAGGGAGTGTCCACTTCACTGTCATTTCCACTGAGCATCCTTGGTCTGACGGCTCTGAACAGCTAGAATG GATGAAGAGTGACATGGCTTCAGTTGACAGATCAAAGACTCCTTGGCTGGTCTTTGCAGGGCATAGACCTATGTATTCATCTTCAAACCCAACAAGCGCA GACGAAAAGTTTGTCGAAACAGTAGAGCCATTGATGCAGCAGTACAAGGTCGACGTAGCACTATTTGGACATGTACACAACTACGAGAGGATGTGTTCTG TCTACCGAGGGGATTGCCTCGCAATGCCTAGGAAAGACGAAAACGGCGTGGACATTTATGATCACAACAATTACAGCGCACCAGTTCAGGCTGTGATAGG CATGGCTGGTTTCAAATTGGACAAATTCTCTGACATTGTGGCGCCTGAAAAATGGAGCTTGAGAAGGATTGCAGAGTATGGATACATGAGAGCTCATGCT ACCAGGACCGAGTTCAATTTTGAGTTTGTGAATGCGAATACACTGAGTACTCATGATAGTTTCCGCATTATCAAATCAGCAAACTAA
AA sequence Show only first row Show all	>Lus10024179 pacid=23141524 polypeptide=Lus10024179 locus=Lus10024179.g ID=Lus10024179.BGIv1.0 annot-version=v1.0 MELLRLYLLLIAVAAVVLHSSAASSSAHSSLHPTVAYSMMEHRDHTGISDFRVLNRRSLGQCPDPNPYLDITVSTNQLLADEEYVKVTVSGVLIPSELDW VGMISPSDSDVSACPLKKAEYLQTGDLAHLPLLCHYPVKGQMVSSDGDYLGCKKKQCQKSKGPTCSVSTCNATITFHVVNFRTDVEFVFFTGGFDAPWRL RRTLYTRKIRTVEIRQSKPAPLFSHLRRRFISNFLKYGDGQTIHSEATTFTQDDMCSSLLPSPAKDFGWHDPGHIHSAIMTGLQPSNTYSFKYGSDSVGW SEEMKFKTPPAGGSDEVRFLAYGDMGKAPLDPSAEHYIQPGSLSVVKAMTNEVESGNVDSIFHIGDISYATGFLVEWDYFLQLISPMASQVSYMTAIGNH ERDYINTGSVYGTPDSGGECGVPYETYFPMPTSEKDKPWYSIEQGSVHFTVISTEHPWSDGSEQLEWMKSDMASVDRSKTPWLVFAGHRPMYSSSNPTSA DEKFVETVEPLMQQYKVDVALFGHVHNYERMCSVYRGDCLAMPRKDENGVDIYDHNNYSAPVQAVIGMAGFKLDKFSDIVAPEKWSLRRIAEYGYMRAHA TRTEFNFEFVNANTLSTHDSFRIIKSAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10024179 [exp]	0	1
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10034707 [exp]	2.8	0.7496
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10043271 [exp]	4.6	0.7496
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	6.9	0.7424
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10017072 [exp]	7.1	0.6834
					Lus10032489 [exp]	20.1	0.6317
AT3G27970			Exonuclease family protein (.1...		Lus10008787 [exp]	20.2	0.7080
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10035903 [exp]	20.4	0.7253
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10014661 [exp]	22.9	0.6776
AT3G26730			RING/U-box superfamily protein...		Lus10031993 [exp]	27.9	0.6826
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10033315 [exp]	28.0	0.5794

Compare expression of checked genes

Lus10024179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.