Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51930 476 / 2e-167 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 257 / 8e-81 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 238 / 1e-74 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 233 / 3e-72 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 232 / 5e-71 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 228 / 8e-70 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 228 / 9e-70 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 219 / 8e-67 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 211 / 9e-63 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 202 / 1e-60 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039568 [exp] 736 / 0 AT3G51930 498 / 6e-176 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 246 / 8e-77 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 238 / 5e-74 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 236 / 4e-73 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 233 / 8e-72 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 226 / 1e-69 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043466 [exp] 226 / 3e-68 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006460 [exp] 221 / 1e-67 AT1G24530 414 / 3e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036881 [exp] 216 / 2e-65 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202700 [exp] 563 / 0 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G022900 [exp] 559 / 0 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 258 / 2e-81 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 257 / 7e-81 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 237 / 3e-73 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 236 / 4e-73 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 237 / 6e-73 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 235 / 3e-72 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 236 / 5e-72 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 232 / 5e-72 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10024180 pacid=23141534 polypeptide=Lus10024180 locus=Lus10024180.g ID=Lus10024180.BGIv1.0 annot-version=v1.0 ATGCTCCAACATCATACCATCAACAAAATCGGATATGGCGGCTCCCATTACATTTCCCCTCTCCACCAAGATCCCACCATCCCTCTTTCCACTCCTTCAA CTCCATTGCTCTCCGAATCAGACAGAAGCTTCCTCCACATCTCCACCACCAGCAGCGAACTCAGCGACGAAGAGAGCTCTTCTCAATCTTTCCGATTCGG TTCAACCACGCCGACCAAATCTCTATCCAGGTTGTCGTCCTGCTCCTCGTCGTACAGGTCTCTGGCGGTTCTTTCGGGCCACGTGGGCTCTATTTCTTGC TTGGCACTCTGCGGCGAGTTTATCCTAAGCGCTTCGCAGGGCAAAGACATAATCGTATGGCAGCAGCCTGATATGAGGATGTTCACCAAGTTCGGCCAGG GGGATGGATCGGTGAAGGCGTTGGTTTCGATCGGGAACAAAGTTTTCACGGCGCATCAAGACAGCAGGATCCGGGTGTGGAAAGTTTCGAGGAGTTCCGA AAACGTATTCAAGCTGCTGGACACAATGCCTACAAGAAAAGACTACTTGGGGAAGTTCATGAAGCAGAGCAATTACGTCCAGACGAGAAGGCACCATAAA AAACTGTGGATCGAACACGCCGATAGCATTTCCTGCTTAGCAGCTAACAGCGGGTTGATCTACTCTGGCTCTTGGGACAAAACCATTAAGGTCTGGAGGG TGTCTGATCTCAAGTGCCTGGAATCAATCAAAGCTCATGACGATGCAATTAACGGGATTGCAGCTTGTACAGGATCAGGAGGAGGAATGGTGTATTCCGC TTCTGCAGACGGAAAGATCAAAGCTTGGGTGAAGGAGAGCTCAAATAATAAGGTTCATTCGTTGAAGGGGATACTGGAGGGGCATAAGGATGTGTCGTTC AATTCGGTGATTGTTTCGGAAGATGGGAAGTGGGTGTACGGAGGAGGATCAGATGGGTATGTGATGGGATGGGAAGGGAGGGACGAATTGGTGAGGTGGG AATTGGTTTGTGAGGTGAAAGCTCATGAGATGGCTGTTCTGTGTATGTGTATGGTTGGCGGGTTGGTGTTCACTGGTTCAGCTGATAAGAGTATTGGGAT ATGGAAGAGGGAAGCTTTTGGGAAGCTGTTGAGAATTGGGGTGATTTCAGGTCATGAAGGGCCTGTCAAGTGCTTGCAAGCTTCGAGCAGTAATGTTGGT GGTGGGTTTTTGCTGTACAGTGGTGGACTTGACAGGAGCCTTAGGGTGTGGTGGGTTCCTAGCAGCCGGCAGGAGGAGGGCAGGAGTTGTTGCTACAGCA GGAACAGAAGTCGTTAA
AA sequence Show only first row Show all	>Lus10024180 pacid=23141534 polypeptide=Lus10024180 locus=Lus10024180.g ID=Lus10024180.BGIv1.0 annot-version=v1.0 MLQHHTINKIGYGGSHYISPLHQDPTIPLSTPSTPLLSESDRSFLHISTTSSELSDEESSSQSFRFGSTTPTKSLSRLSSCSSSYRSLAVLSGHVGSISC LALCGEFILSASQGKDIIVWQQPDMRMFTKFGQGDGSVKALVSIGNKVFTAHQDSRIRVWKVSRSSENVFKLLDTMPTRKDYLGKFMKQSNYVQTRRHHK KLWIEHADSISCLAANSGLIYSGSWDKTIKVWRVSDLKCLESIKAHDDAINGIAACTGSGGGMVYSASADGKIKAWVKESSNNKVHSLKGILEGHKDVSF NSVIVSEDGKWVYGGGSDGYVMGWEGRDELVRWELVCEVKAHEMAVLCMCMVGGLVFTGSADKSIGIWKREAFGKLLRIGVISGHEGPVKCLQASSSNVG GGFLLYSGGLDRSLRVWWVPSSRQEEGRSCCYSRNRSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51930			Transducin/WD40 repeat-like su...		Lus10024180 [exp]	0	1
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10015545 [exp]	2.4	0.9551
AT1G80530			Major facilitator superfamily ...		Lus10017480 [exp]	5.4	0.9579
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10012157 [exp]	11.0	0.9494
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10042688 [exp]	11.7	0.9257
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10011430 [exp]	14.6	0.9485
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	17.2	0.9466
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10042255 [exp]	17.9	0.9403
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	18.7	0.9392
AT3G01516			unknown protein		Lus10014544 [exp]	19.3	0.9365
AT1G63940		MDAR6	monodehydroascorbate reductase...		Lus10028763 [exp]	19.9	0.9364

Compare expression of checked genes

Lus10024180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.