Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08550 667 / 0 ABI8, ELD1, KOB1 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) AT3G57200 578 / 0 unknown protein AT2G41451 544 / 0 unknown protein AT3G61030 113 / 3e-27 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 112 / 9e-27 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039569 [exp] 807 / 0 AT3G08550 781 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10018036 [exp] 588 / 0 AT3G57200 705 / 0.0 unknown protein Lus10042032 [exp] 563 / 0 AT3G57200 681 / 0.0 unknown protein Lus10000243 [exp] 269 / 2e-89 AT3G08550 255 / 3e-83 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10024182 [exp] 194 / 4e-61 AT3G08550 114 / 2e-30 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G022700 [exp] 694 / 0 AT3G08550 749 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Potri.003G202900 [exp] 676 / 0 AT3G08550 699 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Potri.016G041900 [exp] 624 / 0 AT3G57200 744 / 0.0 unknown protein Potri.006G045500 [exp] 553 / 0 AT3G57200 646 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024181 pacid=23141525 polypeptide=Lus10024181 locus=Lus10024181.g ID=Lus10024181.BGIv1.0 annot-version=v1.0 ATGCCGAATCCCCACCACCTTCACGCGCTGCTCCGGCCATCGCAGTCCTCTTCCTCGACGGCGCAATCCTTTGCCTCGAAGCTGATCCTCCTCCTTACAG TACTCCCTCTCTCTCTGGCAGCTTTGGCCTTCGTTCTGCAATGGAAAGGAGAAGGGGGAGGACTCCTCGCCGACCCGGCCTCCGTCACTGCACGTTGGGC TCCTCAGGGCTCTAATAACAATCACGAGGTGTTCCCGGGGATGGAAGCCTCTGCTGCATCTCTGCTGTCTCCTAAACCCCATCACCAGTCATCTGATTGT TTAAGTCTTGCCAAGAGTGGTTCTCCTTCTTTTCCTTATTTTCGGGATTGGAAGTTCGATTTCGATGCCAATTTGAAGCCCAAGATCTGTGTTACTACAA GTACTTCAGCTACCCTAGATCAGATTCTTCCGTGGATGTTCTACCATAAGGTTATTGGGGTGTCAACCTTTTACTTGTTTGTTGAAGGGAAAGCAGCCTC ACCAGGCGTGTCTAAAGTTCTTGAATCCATCCCTGGCGTTAAAGTTATTTACAGAACAAAAGAGCTAGAGCAGCAACAAGCTAGAAGCCGTATTTGGAAT GAGACATGGCTGTCGAGTTTCTTCTACAAACCATGCAACTATGAGCTATTTGTGAAGCAATCTCTCAACATGGAGATGGCTATTGTGATGGCCAGGGATG CAGGCATGGATTGGATACTTCACCTTGACACCGATGAACTCATACATCCTGCTGGTTCTAGCGAATATTCTTTGAGGCAGTTACTTCTTGATGTTCCTGG AGATGTGGATATGGTTATCTTTCCAAACTATGAAAGCAGCATTGAACGAGATGATATCAAAGACCCTTTTGGAGAGATTTCCATGTTCAAGAAAAATTAC GACCACCTACCAAAGGATACATATTTCGGCATGTACAAGGAATCCACTCGTGGTAATCCCAATTACTTCTTGACGTACGGGAATGGGAAGTCTGTTGCTC GGGTTCAGGAACATCTTCGTCCAAATGGTGCACACAGATGGCACAATTATATGAAAACTCCCAACGAAGTGAAGCTGGAAGAGGCTGCTGTGCTACATTA CACTTATGCCAAATTTTCAGACTTGACTTCTAGGCGTGATCGATGTGGCTGTAAACCAACAAAGGACGATGTCAAAAGATGCTTTATGTTGGAATTTGAC AGATCTGCCTTCATTATCGCTTCGACTGCAACAGAGGAAGAAATGCGGAATTGGTAA
AA sequence Show only first row Show all	>Lus10024181 pacid=23141525 polypeptide=Lus10024181 locus=Lus10024181.g ID=Lus10024181.BGIv1.0 annot-version=v1.0 MPNPHHLHALLRPSQSSSSTAQSFASKLILLLTVLPLSLAALAFVLQWKGEGGGLLADPASVTARWAPQGSNNNHEVFPGMEASAASLLSPKPHHQSSDC LSLAKSGSPSFPYFRDWKFDFDANLKPKICVTTSTSATLDQILPWMFYHKVIGVSTFYLFVEGKAASPGVSKVLESIPGVKVIYRTKELEQQQARSRIWN ETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIHPAGSSEYSLRQLLLDVPGDVDMVIFPNYESSIERDDIKDPFGEISMFKKNY DHLPKDTYFGMYKESTRGNPNYFLTYGNGKSVARVQEHLRPNGAHRWHNYMKTPNEVKLEEAAVLHYTYAKFSDLTSRRDRCGCKPTKDDVKRCFMLEFD RSAFIIASTATEEEMRNW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024181 [exp]	0	1
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024182 [exp]	1.0	0.9472
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10039569 [exp]	1.7	0.9003
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10037795 [exp]	4.5	0.9060
AT4G21450			PapD-like superfamily protein ...		Lus10039757 [exp]	4.9	0.8871
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10019571 [exp]	5.2	0.8609
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10023103 [exp]	6.0	0.8994
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Lus10004776 [exp]	6.2	0.8793
AT5G54920			unknown protein		Lus10040755 [exp]	7.3	0.8733
AT1G04200			unknown protein		Lus10006619 [exp]	7.3	0.8846
AT3G01810			unknown protein		Lus10037001 [exp]	7.7	0.8762

Compare expression of checked genes

Lus10024181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.