Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40470 204 / 2e-66 AS2 ASL11, LBD15 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) AT2G30340 201 / 2e-64 AS2 LBD13 LOB domain-containing protein 13 (.1) AT2G30130 139 / 3e-41 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT1G65620 130 / 7e-38 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT1G31320 129 / 8e-38 AS2 LBD4 LOB domain-containing protein 4 (.1) AT3G27650 125 / 4e-36 AS2 LBD25 LOB domain-containing protein 25 (.1) AT1G07900 125 / 5e-36 AS2 LBD1 LOB domain-containing protein 1 (.1) AT5G66870 126 / 4e-35 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT2G28500 124 / 4e-35 AS2 LBD11 LOB domain-containing protein 11 (.1) AT1G16530 121 / 9e-35 AS2 ASL9, LBD3 LOB DOMAIN-CONTAINING PROTEIN 3, ASYMMETRIC LEAVES 2-like 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009930 [exp] 246 / 4e-83 AT2G30340 230 / 5e-76 LOB domain-containing protein 13 (.1) Lus10029061 [exp] 168 / 3e-52 AT2G30340 201 / 1e-64 LOB domain-containing protein 13 (.1) Lus10034208 [exp] 168 / 4e-52 AT2G30340 201 / 9e-65 LOB domain-containing protein 13 (.1) Lus10031285 [exp] 137 / 1e-40 AT2G30130 226 / 3e-76 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10018275 [exp] 136 / 3e-40 AT1G31320 243 / 2e-83 LOB domain-containing protein 4 (.1) Lus10040638 [exp] 135 / 9e-40 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1) Lus10031855 [exp] 134 / 9e-40 AT2G30130 220 / 4e-74 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10007525 [exp] 134 / 1e-39 AT2G30130 204 / 1e-67 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10031191 [exp] 132 / 7e-39 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G081200 [exp] 207 / 1e-67 AT2G40470 249 / 2e-84 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.019G127300 [exp] 202 / 1e-65 AT2G40470 225 / 1e-74 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.013G156200 [exp] 200 / 8e-65 AT2G40470 207 / 2e-67 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.007G066700 [exp] 141 / 1e-42 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.005G097800 [exp] 139 / 5e-42 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.010G184400 [exp] 136 / 2e-40 AT2G30130 227 / 7e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.001G281600 [exp] 135 / 5e-40 AT2G30130 248 / 4e-85 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.008G072800 [exp] 134 / 8e-40 AT2G30130 229 / 8e-78 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.001G081400 [exp] 134 / 9e-40 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1) Potri.003G149000 [exp] 134 / 1e-39 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain PF05308 [flax] [poplar] Mito_fiss_reg Mitochondrial fission regulator
Representative CDS sequence Show only first row Show all	>Lus10024183 pacid=23175758 polypeptide=Lus10024183 locus=Lus10024183.g ID=Lus10024183.BGIv1.0 annot-version=v1.0 ATGGGGATGAGATCAATAGTGATGAACATGATTTCTCCTCCAGGAGTATTAAACACAGTCACTCCCTGCGCCGCCTGCAAGCTCCTCCGCCGTCGCTGCG CCGAGGAGTGCCCTTTCTCCCCTTACTTCTCCCCTCACGAGCCCCACAAGTTCGCCGCCGTCCACAAGGTCTTCGGCGCCAGCAACGTCTCCAAGATGCT CCTCGAGGTGCCGGAGAGCCAGAGGGCGGACGCGGCGAACAGCCTGGTGTACGAAGCGAACCTGAGGCTGAGGGATCCGGTGTACGGGTGCATGGGAGCA ATCTCAGCACTGCAGCAGCAGATTCAGTCCCTCCAGTCTGAACTTAACGGCGTCAGGTCTGAGATCCTAAAGTACAAGTACAGAGAGGCCACCACTAGCC TTCTCTCCTCAGCAGCACACGCTTCTTTGATCTCATCCGGCGTCGTTTCCGTCATTGCACCAACAACCCCTGTTGTTGTTGGCCCCAATCAACACCGCCA TCATCAACCACAGCCTCCGAGGACACCTACTCCTGCTCCTCCGCCGCCGCAGCCGTCGATAGTTATATCGTCGTCGTCGTCGAGTACGAATGCTTCTAAT AATAATAATAATACTAATAATTTATATAGCTCCATTACAGCAAGCGATCGCCACAGCGGTGTTCCTTATTTTGACTAA
AA sequence Show only first row Show all	>Lus10024183 pacid=23175758 polypeptide=Lus10024183 locus=Lus10024183.g ID=Lus10024183.BGIv1.0 annot-version=v1.0 MGMRSIVMNMISPPGVLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPESQRADAANSLVYEANLRLRDPVYGCMGA ISALQQQIQSLQSELNGVRSEILKYKYREATTSLLSSAAHASLISSGVVSVIAPTTPVVVGPNQHRHHQPQPPRTPTPAPPPPQPSIVISSSSSSTNASN NNNNTNNLYSSITASDRHSGVPYFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10024183 [exp]	0	1
AT3G23090			TPX2 (targeting protein for Xk...		Lus10021223 [exp]	2.4	0.8868
AT3G19895			RING/U-box superfamily protein...		Lus10000199 [exp]	2.6	0.8730
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10021467 [exp]	3.5	0.8537
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033981 [exp]	7.2	0.8511
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10021968 [exp]	8.1	0.8812
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10034472 [exp]	8.2	0.8153
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010106 [exp]	8.8	0.8754
AT5G50090			unknown protein		Lus10043461 [exp]	9.6	0.8769
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	11.4	0.8755
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	12.4	0.8335

Compare expression of checked genes

Lus10024183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.