Plant FIBer expression Database

Lus10024185 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06930 47 / 2e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009929
[exp]
107 / 3e-28 AT1G06930 61 / 1e-11 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G127400
[exp]
44 / 4e-05 AT1G06930 / unknown protein
Potri.013G156100
[exp]
44 / 4e-05 AT1G06930 / unknown protein
PFAM info
Representative CDS sequence
>Lus10024185 pacid=23175800 polypeptide=Lus10024185 locus=Lus10024185.g ID=Lus10024185.BGIv1.0 annot-version=v1.0
ATGGTACTCACGACAACTCAAAATCCCACCCCTCTTCTCCTCAAACCCAACCAAGAAGAAGAAGACTACCATGGTGGCTCACCGGCTTCTGTCCCCTTCA
AGTGGGAGTCCCAACCCGGGACTCCCAAGGCTCGTAAGGAATCTCTTCCATTGCCGCCACTCACTCCTCCACCTTCCTACTTCTACTCTTTTCCCCATTT
TGCCACCCCGATGAGATCCCCGAAGAAGACGGAAAAGAAGAAAAACAAGCGAACAAATTTCTTCTTCTTCTCAAAACCATGGGTTTCTTCCAAGCCAACA
AGCAACAAAAACAAGAAAAAATCGAAGCCGGATTCGCCTGTTTATTCTTCGTCCTCCTCGTCTTATTCTTCTGGATCAGCTTCCTCCTCCTCCGTGCCTT
CTTCCCCGTTGACTAGTAAAGTTAATAATGCGGTGGTGGCTAATTCGACCCCGAGGAATAAGTCATCCTTTGGGGACATGATTCAATCCGACGATCGTGC
TCATCATCCTCGTGGTAATAATAATGAGGTAGAAACTGAGGAGGAAGAGGAAGAATGTAGTGAGTCATCACCGGTTTCGACTCTATGCTTCGGTGGTGGA
TCGGGTCATGGTGATGCACCGCCTGGTGGGGCCAGTAATCCGAGGGCGAGGGCCTGCTGTTATGCTTCCATCTTCAAGGTATTGATGCTTAGAGACGCTT
GA
AA sequence
>Lus10024185 pacid=23175800 polypeptide=Lus10024185 locus=Lus10024185.g ID=Lus10024185.BGIv1.0 annot-version=v1.0
MVLTTTQNPTPLLLKPNQEEEDYHGGSPASVPFKWESQPGTPKARKESLPLPPLTPPPSYFYSFPHFATPMRSPKKTEKKKNKRTNFFFFSKPWVSSKPT
SNKNKKKSKPDSPVYSSSSSSYSSGSASSSSVPSSPLTSKVNNAVVANSTPRNKSSFGDMIQSDDRAHHPRGNNNEVETEEEEEECSESSPVSTLCFGGG
SGHGDAPPGGASNPRARACCYASIFKVLMLRDA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G06930 unknown protein Lus10024185
[exp]
0 1
AT5G60520 Late embryogenesis abundant (L... Lus10036107
[exp]
1.0 0.9827
AT3G18200 nodulin MtN21 /EamA-like trans... Lus10038959
[exp]
1.4 0.9811
AT5G57090 MM31, ATPIN2, A... WAVY ROOTS 6, ETHYLENE INSENSI... Lus10001429
[exp]
3.9 0.9800
AT5G13870 EXGT-A4, XTH5, ... endoxyloglucan transferase A4,... Lus10011052
[exp]
4.5 0.9751
AT1G12740 CYP87A2 "cytochrome P450, family 87, s... Lus10024495
[exp]
5.5 0.9665
AT1G62770 Plant invertase/pectin methyle... Lus10032230
[exp]
6.0 0.9673
AT3G24750 unknown protein Lus10038162
[exp]
7.5 0.9698
AT2G47270 bHLH bHLH151, UPB1 UPBEAT1, sequence-specific DNA... Lus10010001
[exp]
7.7 0.9714
AT5G13870 EXGT-A4, XTH5, ... endoxyloglucan transferase A4,... Lus10003022
[exp]
8.1 0.9569
AT5G57090 MM31, ATPIN2, A... WAVY ROOTS 6, ETHYLENE INSENSI... Lus10001637
[exp]
8.7 0.9726

Lus10024185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.