Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30350 258 / 5e-83 Excinuclease ABC, C subunit, N-terminal (.1.2) AT5G43210 53 / 3e-08 Excinuclease ABC, C subunit, N-terminal (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042228 [exp] 356 / 7e-121 AT2G30350 257 / 9e-83 Excinuclease ABC, C subunit, N-terminal (.1.2) Lus10009927 [exp] 228 / 2e-72 ND 37 / 0.009 Lus10008583 [exp] 68 / 3e-14 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G127600 [exp] 278 / 9e-88 AT2G30350 269 / 5e-85 Excinuclease ABC, C subunit, N-terminal (.1.2) Potri.013G155900 [exp] 272 / 3e-86 AT2G30350 268 / 4e-85 Excinuclease ABC, C subunit, N-terminal (.1.2) Potri.001G259216 [exp] 53 / 4e-08 AT5G43210 168 / 1e-53 Excinuclease ABC, C subunit, N-terminal (.1) Potri.001G259900 [exp] 53 / 4e-08 AT5G43210 168 / 1e-53 Excinuclease ABC, C subunit, N-terminal (.1) Potri.001G260600 [exp] 52 / 1e-07 AT5G43210 165 / 7e-52 Excinuclease ABC, C subunit, N-terminal (.1) Potri.001G260300 [exp] 49 / 7e-07 AT5G43210 132 / 1e-39 Excinuclease ABC, C subunit, N-terminal (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0418 [flax] [poplar] GIY-YIG PF01541 [flax] [poplar] GIY-YIG GIY-YIG catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10024187 pacid=23175752 polypeptide=Lus10024187 locus=Lus10024187.g ID=Lus10024187.BGIv1.0 annot-version=v1.0 ATGGGGAGGGGGAAATCGAAAAACAGCAGAGCAGATTGGACGACGAAGTCGAAGATCAAGACCGAAACCCTAAACCCTGAACCACATCGACAAGACGCAG ACGACGGAGATGTAGATGGGGAAAACGCACCTGGAGGAGGAAACAGATTTTACGCCTGTTACCTCCTCACTTCCCTCTCCCCTCGTTTCAAAGGCTTCAC TTACATCGGATTCACGGTGAATCCGCGGCGCAGAATCAGACAGCACAACGGGGAAATCACGATGGGGGCATGGAAGACCAAGAAACGGCGTCCTTGGGAA ATGGTCCTTTGCGTCTATGGCTTCCCAACTAATGTTTCTGCTCTCCAGTTCGAGTGGGCTTGGCAGCATCCGATGGAATCCAAGGCTGTCAGGGAAGCAG CCGCCAAGTTCAAATCCTTCTCTGGAGTTGCTAACAAGGTCAAACTTGCCTACACAATGCTTTCTCTTCCTCCTTGGCACAGGTTGAACTTAACTATCAA CTATTTCTCTACCAAGCACATGAATAGCTCTTCTGGTTCGCTTAGTTTGCCAAAGCAGATGAAGGTCCAAGTTTGCCCCATGGATGAGCTACCTTGTTAT GATGACAACATGTTGTTTGATGACGGAGAAGAAGATGATGATTTCGTTGATGATGGAAAAGAGCACAGTACAGTCAGATGTGATAAACAACTTGGAGATG GCGAAGATGATAATGAATGCAGTGATAATGTGATGAAAAACGTCGAGGAACCTTACAGATATGATGAATATTATCTGGCAGCGGATTCTGCAGGTATCAT TGACGATTCTTCAAATGAAAAGGGGGCATGGTTCGAGGTGGAACGAGACTGGACACTTTCGAGGTGCTCCTCTCCTAACCCGGAAGTACATGATCGGATG CATACATTTGATGGTTCGCCTCTGAGAAGAATCTCTCCGATTTGTAGCAAGTTACTGTCAGCGGGAGAGATGTCAGATGGGAGTAATGTAGTGGTGATGA TCAGTGGTGGGAGTGATTCGAAATTTTGTTCCGTGAAAAGGAAGGAATCCACAGATAGAGGTGTTGCTGCTGGTGAAGATGCTGCAGCCTACCGTTCGGC CAACTTTTCAAATCGAATTGAGGTAATTGATTTGTTGTCGCCATCACCGGAGTTGAGAATGTGGTCAATCAGCAAGAAGAGGAGATTTGCTGATGCTGTT TCCCCCCGATTCATTGACTTGACTTAG
AA sequence Show only first row Show all	>Lus10024187 pacid=23175752 polypeptide=Lus10024187 locus=Lus10024187.g ID=Lus10024187.BGIv1.0 annot-version=v1.0 MGRGKSKNSRADWTTKSKIKTETLNPEPHRQDADDGDVDGENAPGGGNRFYACYLLTSLSPRFKGFTYIGFTVNPRRRIRQHNGEITMGAWKTKKRRPWE MVLCVYGFPTNVSALQFEWAWQHPMESKAVREAAAKFKSFSGVANKVKLAYTMLSLPPWHRLNLTINYFSTKHMNSSSGSLSLPKQMKVQVCPMDELPCY DDNMLFDDGEEDDDFVDDGKEHSTVRCDKQLGDGEDDNECSDNVMKNVEEPYRYDEYYLAADSAGIIDDSSNEKGAWFEVERDWTLSRCSSPNPEVHDRM HTFDGSPLRRISPICSKLLSAGEMSDGSNVVVMISGGSDSKFCSVKRKESTDRGVAAGEDAAAYRSANFSNRIEVIDLLSPSPELRMWSISKKRRFADAV SPRFIDLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10024187 [exp]	0	1
AT4G38670			Pathogenesis-related thaumatin...		Lus10041108 [exp]	3.5	0.7229
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10020513 [exp]	10.4	0.7309
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	15.6	0.7093
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Lus10018200 [exp]	15.9	0.6999
AT5G18610			Protein kinase superfamily pro...		Lus10041426 [exp]	16.1	0.7328
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10021113 [exp]	23.1	0.6893
AT1G15060			Uncharacterised conserved prot...		Lus10043481 [exp]	24.2	0.7003
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10042699 [exp]	24.5	0.6921
AT5G04460			RING/U-box superfamily protein...		Lus10038656 [exp]	25.0	0.7000
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10001582 [exp]	27.1	0.7066

Compare expression of checked genes

Lus10024187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.