Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024189 pacid=23175806 polypeptide=Lus10024189 locus=Lus10024189.g ID=Lus10024189.BGIv1.0 annot-version=v1.0 ATGTTAGCCGCGGCACTGAGCCCTGACTTTGTCGCGTTCTCAATTCTCATGACTTGTCTCGGCGTACTTGGAGAAGGGGATGGTGGTGGAGGAGGAGGGA GGTTCTACGACAACGACGTTGTTAGGGAGGAGGCTGCTGCTGGGTGGGCCGGGGTCGTCGCCGCCGAGGTGCACGTGGAAATGCGGAAAGTGCAAGCCGT GCAAGCCGGTGCACGTGCCGGTGCCGCCAGGGACGCCGGTGACGGCAGAGTATTACCCGGAAGCATGGAGGTGCAAGTGTGGGAACAAGCTCTACATGCC GTGATTAATATTGATGTGTAA
AA sequence Show only first row Show all	>Lus10024189 pacid=23175806 polypeptide=Lus10024189 locus=Lus10024189.g ID=Lus10024189.BGIv1.0 annot-version=v1.0 MLAAALSPDFVAFSILMTCLGVLGEGDGGGGGGRFYDNDVVREEAAAGWAGVVAAEVHVEMRKVQAVQAGARAGAARDAGDGRVLPGSMEVQVWEQALHA VINIDV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024189 [exp]	0	1
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10013230 [exp]	1.4	0.9345
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10003335 [exp]	1.4	0.9521
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10023417 [exp]	5.8	0.9003
					Lus10011220 [exp]	12.5	0.9138
AT3G45400			exostosin family protein (.1)		Lus10005684 [exp]	12.6	0.8591
AT3G52270			Transcription initiation facto...		Lus10023502 [exp]	12.8	0.8584
AT3G63300		FKD1	FORKED 1 (.1.2)		Lus10004079 [exp]	13.0	0.9168
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	13.2	0.8884
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001172 [exp]	14.4	0.9096
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10020159 [exp]	14.8	0.9060

Compare expression of checked genes

Lus10024189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.