Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45260 253 / 7e-80 Plant protein of unknown function (DUF641) (.1) AT2G30380 224 / 1e-67 Plant protein of unknown function (DUF641) (.1) AT3G14870 174 / 4e-49 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G29300 167 / 6e-47 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT3G60680 166 / 5e-46 Plant protein of unknown function (DUF641) (.1) AT1G53380 165 / 6e-46 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT5G58960 142 / 2e-37 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT4G34080 132 / 2e-35 Plant protein of unknown function (DUF641) (.1) AT4G33320 128 / 8e-34 Plant protein of unknown function (DUF641) (.1) AT4G36100 59 / 7e-10 Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009923 [exp] 736 / 0 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) Lus10008587 [exp] 564 / 0 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 253 / 8e-80 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 249 / 3e-78 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 178 / 2e-50 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10016444 [exp] 168 / 3e-46 AT5G58960 635 / 0.0 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10007312 [exp] 154 / 1e-41 AT1G29300 433 / 2e-149 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10029259 [exp] 150 / 1e-40 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10005424 [exp] 149 / 4e-40 AT1G29300 365 / 3e-123 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155400 [exp] 491 / 2e-172 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.019G128300 [exp] 412 / 1e-141 AT2G45260 241 / 2e-75 Plant protein of unknown function (DUF641) (.1) Potri.002G145900 [exp] 258 / 7e-82 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.011G108000 [exp] 194 / 4e-57 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.002G145000 [exp] 191 / 2e-55 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.001G387700 [exp] 189 / 3e-55 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.014G066600 [exp] 181 / 7e-52 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.009G041000 [exp] 167 / 8e-46 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.004G061600 [exp] 158 / 1e-43 AT1G29300 485 / 6e-170 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.011G071000 [exp] 154 / 7e-42 AT1G29300 483 / 3e-169 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [flax] [poplar] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Lus10024190 pacid=23175798 polypeptide=Lus10024190 locus=Lus10024190.g ID=Lus10024190.BGIv1.0 annot-version=v1.0 ATGGAGTGTGCTCAGACTAAACCCTTAAAGCAGCCTTCTTCAAACATAACGGATATGGTTTCCAAGTTTGCCAAAGTTTGCAGATTGAGATCCATTGGCG TATTGTCCGGCGAAAACCCTCATACCCAGATCCACCCAGCAGGCATTCACAAGGTGCCATTGATGGGTGAGAGCAGGAGCACCAGTGATGCTACCACTGA AGAGATGGAGTGCGGCGGCGAGAGGGAAAAAGTTCCTCCTGGGAAAATGAGTGGTGGCGACAAGGATATCATCAAGCTGTTTGATTCAGTTTCTGCTCTG AAATTGGCATATATTCAGCTTCAGGAAGCTCACGTCCCTTATAACCCTGAAAAGATTCTCGCTGCTGATGAAGTCGTCATGTCTCAGCTTCAGACTCTAT GCAACATCAGGCGGTCAGTTAAGGAGAAGCGGTTGGAGAAGAAAAAGGTCGAATCTTTTCGTTTGGACTCTTTACGAGCAGAGGTTGAAGCTAAAGAGAG TGAATTGGAGCTGCTAAAGTCGCAGAGTGGGGCTAAAGAGGCTGAGATTGCTCGATTGAGGGACGAGCTTCATGATTTGGATACGGGGAATTTTCTGTTG CTCGAGACAATCAAGGCGAAAAGCTTGGAGAGACGGAGTCGGAAAGTTGTAGATACGCCCATGTTTGCAGAAATCTTCAGATTGGCTTGTAAGTCAATAC ATGATTTTGCAAAGCCAATGATCAGCCTGATGAAAGCTTCAGGGTGGGATTTGGATTTGGCTGCCAATGCGGTTGTAAATGGAGCGACTTATTCCAAAAG GTCACATAAGAAGTATGCGTTCGAAGCATACATTTCGCGGAGAATGTTCCAAGGGATGACACTTGAGTCGTGTGATGTAGATGATGTTTTGAGGTGTGAA GATCCTATTAAATTGCTGATAGAGAATCCGAGTTCAGGGTTTGCCAACTTCTGTGCAAAAAGGTACTTGCTTGTTGTTCATCCAGTGATGGAGGTTTCTT TCTTTAGGAATTTGGATCATAGAATGTTGGTGATTAGTGGGAAGCATCCGAGGACACCTTTATACCAAATATTTGTGAGAATGGCGAAGTGGATTTGGGC TCTACGGGGAGTTGCCGCATCAATTGATCCCCAAGCAAAAGTATTTGCAGTGAGCAGGGGAAGTGAATTCTCAGATGTCTATATGGAATCTGTCGAAGAG AGGAAGGCAGACAATAAGCAATTCATTGTTGAATTCATGATTATGCCTGGTTTCAGAATTGGGGACAGATTGGTCAAATCTCTGGTTTATCTTTCGAAAC CAAAATAG
AA sequence Show only first row Show all	>Lus10024190 pacid=23175798 polypeptide=Lus10024190 locus=Lus10024190.g ID=Lus10024190.BGIv1.0 annot-version=v1.0 MECAQTKPLKQPSSNITDMVSKFAKVCRLRSIGVLSGENPHTQIHPAGIHKVPLMGESRSTSDATTEEMECGGEREKVPPGKMSGGDKDIIKLFDSVSAL KLAYIQLQEAHVPYNPEKILAADEVVMSQLQTLCNIRRSVKEKRLEKKKVESFRLDSLRAEVEAKESELELLKSQSGAKEAEIARLRDELHDLDTGNFLL LETIKAKSLERRSRKVVDTPMFAEIFRLACKSIHDFAKPMISLMKASGWDLDLAANAVVNGATYSKRSHKKYAFEAYISRRMFQGMTLESCDVDDVLRCE DPIKLLIENPSSGFANFCAKRYLLVVHPVMEVSFFRNLDHRMLVISGKHPRTPLYQIFVRMAKWIWALRGVAASIDPQAKVFAVSRGSEFSDVYMESVEE RKADNKQFIVEFMIMPGFRIGDRLVKSLVYLSKPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45260			Plant protein of unknown funct...		Lus10024190 [exp]	0	1
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	2.6	0.8740
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	6.0	0.8347
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10027452 [exp]	8.3	0.7738
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10038239 [exp]	8.8	0.8327
AT1G69400			Transducin/WD40 repeat-like su...		Lus10026051 [exp]	11.8	0.8260
AT3G60660			unknown protein		Lus10010359 [exp]	11.9	0.8532
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	13.4	0.8349
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	13.8	0.8112
AT5G36930			Disease resistance protein (TI...		Lus10022707 [exp]	17.2	0.7501
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10026361 [exp]	17.8	0.8473

Compare expression of checked genes

Lus10024190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.