Plant FIBer expression Database

Lus10024191 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30395 115 / 1e-32 OFP ATOFP17, OFP17 ovate family protein 17 (.1)
AT1G06923 100 / 3e-27 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009922
[exp]
229 / 9e-78 AT2G30395 141 / 8e-43 ovate family protein 17 (.1)
Lus10008588
[exp]
109 / 2e-30 AT2G30395 97 / 2e-25 ovate family protein 17 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G155300
[exp]
153 / 2e-47 AT2G30395 121 / 1e-34 ovate family protein 17 (.1)
Potri.019G128400
[exp]
139 / 2e-42 AT2G30395 136 / 1e-40 ovate family protein 17 (.1)
PFAM info
Representative CDS sequence
>Lus10024191 pacid=23175796 polypeptide=Lus10024191 locus=Lus10024191.g ID=Lus10024191.BGIv1.0 annot-version=v1.0
ATGAAACCATTGGTTGCCTTCAGATCCAAGCTTCTCGCACCATGCAGGCGACTCTTCCGCACTTTCAGGTTCAAGCTGAGGAAGCCCCTCTTTATGAAGC
CCTTCCAGATACTCCGTCCTCGTCGTGCCAAGTCTCGGCGGAGAAACATGGGCCGGGTGATGGAGCTCAAGAGTGTATCCGAATCAGGGGAACAACATGA
CAGTAAGAAGCTGTTATTATCATTCACTTCTTCTTCTTCCCCAGTCACTCCAGCTTACATTAAGGCCTTCCGGGCTGCTAGAAGGGATAGCAGCAGGTTT
GGCGATGAAGCGGTTGCAGATGCATGCAGAAGCTTTGAAAACTACTTGGTGGATATGATAGTTGAAGAAGGCAAGATGAAGGACTTGACCGATGTCGAGG
AGCTTCTCTATTGTTGGAAGAACCTCAAGTCCCCTGTCTTCATTGGCTTGGTCTGTAGATTCTATGGTGAGCTCTGTAAGGACTTGTTTGCTCCAGATTA
TGAAAAATGA
AA sequence
>Lus10024191 pacid=23175796 polypeptide=Lus10024191 locus=Lus10024191.g ID=Lus10024191.BGIv1.0 annot-version=v1.0
MKPLVAFRSKLLAPCRRLFRTFRFKLRKPLFMKPFQILRPRRAKSRRRNMGRVMELKSVSESGEQHDSKKLLLSFTSSSSPVTPAYIKAFRAARRDSSRF
GDEAVADACRSFENYLVDMIVEEGKMKDLTDVEELLYCWKNLKSPVFIGLVCRFYGELCKDLFAPDYEK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G30395 OFP ATOFP17, OFP17 ovate family protein 17 (.1) Lus10024191
[exp]
0 1
AT5G46860 SGR3, ATVAM3, A... SHOOT GRAVITROPISM 3, ARABIDOP... Lus10040094
[exp]
2.0 0.8158
AT4G20040 Pectin lyase-like superfamily ... Lus10038369
[exp]
4.5 0.7985
AT3G63170 Chalcone-flavanone isomerase f... Lus10042591
[exp]
9.3 0.8218
AT2G15860 unknown protein Lus10021000
[exp]
10.2 0.7883
AT2G29380 HAI3 highly ABA-induced PP2C gene 3... Lus10003887
[exp]
13.9 0.7763
AT1G27310 NTF2A nuclear transport factor 2A (.... Lus10015772
[exp]
21.9 0.7714
AT4G22570 APT3 adenine phosphoribosyl transfe... Lus10024612
[exp]
28.1 0.7533
AT4G13270 Late embryogenesis abundant (L... Lus10023631
[exp]
34.0 0.7453
AT3G16500 AUX_IAA IAA26, PAP1 indole-3-acetic acid inducible... Lus10025817
[exp]
39.8 0.7253
AT2G46490 unknown protein Lus10040009
[exp]
46.0 0.6992

Lus10024191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.