Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58350 541 / 0 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G51630 523 / 0 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT3G22420 441 / 2e-150 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G48260 437 / 1e-149 WNK3 with no lysine (K) kinase 3 (.1) AT5G28080 433 / 2e-148 WNK9 Protein kinase superfamily protein (.1.2) AT1G49160 385 / 8e-129 WNK7 Protein kinase superfamily protein (.1.2) AT3G04910 386 / 3e-127 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT3G18750 380 / 1e-126 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT5G41990 347 / 7e-114 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 341 / 4e-112 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009921 [exp] 875 / 0 AT5G58350 545 / 0.0 with no lysine (K) kinase 4 (.1) Lus10042223 [exp] 696 / 0 AT5G58350 630 / 0.0 with no lysine (K) kinase 4 (.1) Lus10008590 [exp] 694 / 0 AT5G58350 624 / 0.0 with no lysine (K) kinase 4 (.1) Lus10014165 [exp] 501 / 4e-173 AT3G51630 609 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10022747 [exp] 499 / 4e-172 AT3G51630 597 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10010547 [exp] 449 / 3e-152 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 445 / 2e-150 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10001789 [exp] 442 / 6e-149 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10020236 [exp] 441 / 7e-149 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155100 [exp] 626 / 0 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.019G128600 [exp] 599 / 0 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.016G134600 [exp] 536 / 0 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.005G049800 [exp] 461 / 6e-156 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.013G036300 [exp] 449 / 2e-151 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 448 / 7e-151 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 441 / 5e-148 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.012G086700 [exp] 427 / 1e-144 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 424 / 1e-143 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.005G057300 [exp] 374 / 4e-123 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10024192 pacid=23175792 polypeptide=Lus10024192 locus=Lus10024192.g ID=Lus10024192.BGIv1.0 annot-version=v1.0 ATGAACAGTAACCCACCTCTGGATGAGTGTCAGGACGACCATGCTTACGTGGAGACCGATCCTAGTCGCCGGTACGGACGGTTCAATGAAATTCTTGGTA AGGGAGCAACAAAGACAGTGTACAAAGCAATCGATGAATTCCTTGGACTGGAAGTAGCATGGAACCAAGTTAAACTCAATGAACCAGACGATTTGCAGAG GCTCTACTCAGAGGTTCATCTTCTCAGTACGCTTAACCATCCTTCCATCGTCGGCTTCCACTCCTCTTGGATTGACACTCATCACCAGACTTTCAACTCC ATCACTGAAATGCTCACATCTGGGACTCTCAGAGAGTACCGTATGAAGTATCGACGAGTGAACATTAGAGCTATAAAGAGATGGGCTCGTCAAGTGTTAC AGGGTCTTGTTTACTTGCATAGCCATGATCCCCCAGTGATTCACCGAGACTTGAAATGTGACAACATTTTTGTCAATGGTCATCTTGGACAAGTCAAGAT TGGCGATTTCGGGCTTGCAGCACTACTTCAGGATTCCCAATCAGCTCACAGAGTAATAGGGACCCCAGAATTCATGGCTCCGGAATTATATGCAGAAGAT TACAATGAGCTAGTTGATGTCTACTCATTTGGGATGTGTGTTTTGGAGATGATCACTGCTGAATACCCTTACACTGAATGTGCTAATCCAGCAGAGATAT ACAAGAAAGTCACCTCAGGGAAGTTACCAGCAGCGTATTATAGGCTCAGTGACATGGAAGCACAGCGATTTATAGGGAGATGCTTAGTTAGTGCTTCAGA GAGAGTATCTGCAAAAGAGCTCTTGTTAGATCCGTTTGTTGCAGCAGAACCTTATATAGAAGGGGTGGAAAGTCCCAAGCCATTCTTGAACGCCAAAGAA ATGGAGAAACTGCGGCTGAGTGATGATGCAACGCCATCTAAGACAGACATGAGAATCACAGGGAAATTGAACCCGGATGATACCATCTTCCTCAAAGTGA AAATCTTCAATGAAGATGGTTCCATTAGGAATGTGTTTTTCCCATTTGATATTTTACATGACACACCACTGAATGTTGCTATGGAGATGGTGAAGGAGCT GGAAATTGATGATGGGGAAACATCTGAAATTGCTGTAATGATTGACCAAGAGATTTCAGCCCTTCTGCCAAATCGCAAGAGTTGGCAATTTCCTGATCGT GACAGAAGATTTCGGCCACATGGAAACTCAAAATCTGACGGGGAAGCACTTGCCAAGACTGCCTACAAAAACTGCATGGCTTTGTTCGACCGTAGTTATA GAAACAGAATAAGGGGGGCGGTGGACAGCCGGAGATTGACAAGGAACCGGTCGCTAGTGGACCTTCACAGCCATTTGCTACACAGGTCATTGTTGGAAGA GGTGCACAAGAGGCGGCTGGTGAATACAGTCGGAGCTGTCGAAAATATTGGTTTCCGGACACCTCAGTGA
AA sequence Show only first row Show all	>Lus10024192 pacid=23175792 polypeptide=Lus10024192 locus=Lus10024192.g ID=Lus10024192.BGIv1.0 annot-version=v1.0 MNSNPPLDECQDDHAYVETDPSRRYGRFNEILGKGATKTVYKAIDEFLGLEVAWNQVKLNEPDDLQRLYSEVHLLSTLNHPSIVGFHSSWIDTHHQTFNS ITEMLTSGTLREYRMKYRRVNIRAIKRWARQVLQGLVYLHSHDPPVIHRDLKCDNIFVNGHLGQVKIGDFGLAALLQDSQSAHRVIGTPEFMAPELYAED YNELVDVYSFGMCVLEMITAEYPYTECANPAEIYKKVTSGKLPAAYYRLSDMEAQRFIGRCLVSASERVSAKELLLDPFVAAEPYIEGVESPKPFLNAKE MEKLRLSDDATPSKTDMRITGKLNPDDTIFLKVKIFNEDGSIRNVFFPFDILHDTPLNVAMEMVKELEIDDGETSEIAVMIDQEISALLPNRKSWQFPDR DRRFRPHGNSKSDGEALAKTAYKNCMALFDRSYRNRIRGAVDSRRLTRNRSLVDLHSHLLHRSLLEEVHKRRLVNTVGAVENIGFRTPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10024192 [exp]	0	1
AT1G21000			PLATZ transcription factor fam...		Lus10023411 [exp]	1.4	0.9154
AT1G52080		AR791	actin binding protein family (...		Lus10025846 [exp]	3.0	0.9036
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10039320 [exp]	6.7	0.8991
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037601 [exp]	9.5	0.8978
AT1G34320			Protein of unknown function (D...		Lus10017136 [exp]	10.2	0.8970
AT3G51520			diacylglycerol acyltransferase...		Lus10013796 [exp]	15.7	0.8554
AT4G21570			Protein of unknown function (D...		Lus10018447 [exp]	15.8	0.8760
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	17.4	0.9042
AT4G27290			S-locus lectin protein kinase ...		Lus10014810 [exp]	18.4	0.9022
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10010572 [exp]	19.5	0.8787

Compare expression of checked genes

Lus10024192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.