Plant FIBer expression Database

Lus10024193 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47860 560 / 0 Protein of unknown function (DUF1350) (.1)
AT3G43540 120 / 7e-30 Protein of unknown function (DUF1350) (.1), Protein of unknown function (DUF1350) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009920
[exp]
784 / 0 AT5G47860 612 / 0.0 Protein of unknown function (DUF1350) (.1)
Lus10042222
[exp]
604 / 0 AT5G47860 548 / 0.0 Protein of unknown function (DUF1350) (.1)
Lus10008591
[exp]
538 / 0 AT5G47860 486 / 1e-171 Protein of unknown function (DUF1350) (.1)
Lus10019508
[exp]
125 / 2e-30 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10043354
[exp]
99 / 1e-21 AT1G80770 550 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G072400
[exp]
592 / 0 AT5G47860 578 / 0.0 Protein of unknown function (DUF1350) (.1)
Potri.003G158400
[exp]
592 / 0 AT5G47860 605 / 0.0 Protein of unknown function (DUF1350) (.1)
Potri.006G217700
[exp]
128 / 2e-32 AT3G43540 494 / 4e-175 Protein of unknown function (DUF1350) (.1), Protein of unknown function (DUF1350) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF07082 DUF1350 Protein of unknown function (DUF1350)
Representative CDS sequence
>Lus10024193 pacid=23175801 polypeptide=Lus10024193 locus=Lus10024193.g ID=Lus10024193.BGIv1.0 annot-version=v1.0
ATGTTGTACGCATCTGAACTTCCATCCCTCAATTGGCGTGAAATGGCCAGTTGCTTGCGGAGCCATCAGCTAATGCTTCAGTCTCTCAATAACTTCACTA
CTGGCTTCTCCGATTACCCTCTTCTTCCTCCTCCCCATCGCCGCCACCGTTTCCGTCCCCTTGACTCCTTGCTTCACCGTCGTGCAACTACCACCAGAAT
TTGTTGCCAGTATGATGACACCGGAAGCAAACCATCTCAACCATCCTCTTCCTCTTCCGGAATTCAAGTTTATGGTCAGATTGAGAGGATACTTACAGAG
GCGGTGAGGCAATCCCAGAGTAGCTGGGGCTCTTCCGCTGACTGGACTGAAATCGAGGGAGCATGGGTTCTGAAACCAAGAAATGCAAAACCTACCTCAG
TTGTTCATTTCATCGGCGGCATATTTGTTGGAGCAGCACCACAACTAGCTTACCGTTTATTTCTTGAGCACCTTGCTGAAAATGGTGCACTGGTGATTGC
AACACCTTATGCTAGTGAGTTTGACTATTTCCACATAGCAGATGAAGTTCAATTTAAATATGATAAGAGTGTCACGCTTTCTACAAGAATCTGTCTGATT
GGCGTATTTGGTGTGTTCATTCAGGTGCGAGATCTTCCGACCTTTGGAATCGGTCACTCTTTGGGGTCTGTTATTCACCTTCTGATTGGTTCACGTTATG
CTGTTCAAAGAAGCGGGAATGTACTTATGTCGTTTAATAATAAGGTAGGTGAGGTCATTTCCTTCAAATGTCAGGCTCAGGAAGCAAGCTTGGCTGTCCC
TCTCTTCTCGCCTATTCTTCTACCAATGGCTCAAAGCATTGGCCCGATTTTAGCACAGATAGCTACGTCACCAACTGTCCGAATGGGGGCTGAAATGACA
TTGAAGCAGATAGAGAGCCTGACTCCTCCATTCATGAAACAAGCTTTCCCTTTAATTGACCAGCTCCCTCCTCTATATATGGACTTGGTTAATGGAAGAG
AAGAGTTCAGTCCAAAACCTGAAGAGACCCGTCGCCTTATAAAGTCACACTATGGTGTCTCTAGGAACCTCTTAGTAAAATTCAAGGATGATTCTATTGA
CGAGACCATGTCATTAGCTCAAGTCCTCAGTTCAGAATCAGCCATTAGCTCAATGCTAGACATGTCCATTCGGTCATTACCCGGAGATCATGCTCTTCCC
CTGCAACAGGCCATCCCAGATGTCCCGCCAGCAATGGCAAATGCAGTAAACCGATCAAGTGAACTGTTCACGAATCTGACTGCCGGGACACCATGGGAGA
CCGTGGCTAAAGAAGTTGGTAATACGTTAGGGACGGATAACCGGATCCCACGTGTACAAGCCTCGAAGGACTTGGCCAGGCTTGAGGATGTGATCACCTC
CTGGATGGCTTCAAATGCAGGTCCTAAGCTTTTAAAGCCATGA
AA sequence
>Lus10024193 pacid=23175801 polypeptide=Lus10024193 locus=Lus10024193.g ID=Lus10024193.BGIv1.0 annot-version=v1.0
MLYASELPSLNWREMASCLRSHQLMLQSLNNFTTGFSDYPLLPPPHRRHRFRPLDSLLHRRATTTRICCQYDDTGSKPSQPSSSSSGIQVYGQIERILTE
AVRQSQSSWGSSADWTEIEGAWVLKPRNAKPTSVVHFIGGIFVGAAPQLAYRLFLEHLAENGALVIATPYASEFDYFHIADEVQFKYDKSVTLSTRICLI
GVFGVFIQVRDLPTFGIGHSLGSVIHLLIGSRYAVQRSGNVLMSFNNKVGEVISFKCQAQEASLAVPLFSPILLPMAQSIGPILAQIATSPTVRMGAEMT
LKQIESLTPPFMKQAFPLIDQLPPLYMDLVNGREEFSPKPEETRRLIKSHYGVSRNLLVKFKDDSIDETMSLAQVLSSESAISSMLDMSIRSLPGDHALP
LQQAIPDVPPAMANAVNRSSELFTNLTAGTPWETVAKEVGNTLGTDNRIPRVQASKDLARLEDVITSWMASNAGPKLLKP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G47860 Protein of unknown function (D... Lus10024193
[exp]
0 1
AT1G75210 HAD-superfamily hydrolase, sub... Lus10032712
[exp]
5.1 0.8663
AT5G67570 EMB246, DG1, EM... EMBRYO DEFECTIVE 246, embryo d... Lus10025202
[exp]
6.0 0.8460
AT1G54510 ATNEK1 NIMA-related serine/threonine ... Lus10020244
[exp]
6.5 0.8134
AT3G50440 ATMES10 ARABIDOPSIS THALIANA METHYL ES... Lus10023326
[exp]
6.8 0.8551
AT1G71530 Protein kinase superfamily pro... Lus10002469
[exp]
8.1 0.8185
AT4G19830 FKBP-like peptidyl-prolyl cis-... Lus10036206
[exp]
9.8 0.8215
AT2G37390 NAKR2 SODIUM POTASSIUM ROOT DEFECTIV... Lus10025294
[exp]
15.3 0.8094
AT3G18440 ATALMT9 aluminum-activated malate tran... Lus10034301
[exp]
17.0 0.8249
AT2G43020 ATPAO2 polyamine oxidase 2 (.1) Lus10020726
[exp]
17.2 0.8254
AT5G03810 GDSL-like Lipase/Acylhydrolase... Lus10035585
[exp]
20.0 0.8127

Lus10024193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.