Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 362 / 2e-112 lectin protein kinase family protein (.1) AT5G60900 358 / 4e-112 RLK1 receptor-like protein kinase 1 (.1) AT2G19130 339 / 5e-104 S-locus lectin protein kinase family protein (.1) AT4G00340 309 / 6e-93 RLK4 receptor-like protein kinase 4 (.1) AT5G35370 308 / 5e-92 S-locus lectin protein kinase family protein (.1) AT5G24080 281 / 4e-86 Protein kinase superfamily protein (.1) AT4G32300 278 / 1e-81 SD2-5 S-domain-2 5 (.1) AT1G11330 258 / 4e-74 S-locus lectin protein kinase family protein (.1.2) AT1G11280 254 / 1e-72 S-locus lectin protein kinase family protein (.1.2.3.4) AT4G21380 252 / 7e-72 ARK3 receptor kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031805 [exp] 908 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 903 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 653 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 623 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 573 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 494 / 3e-163 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 473 / 7e-160 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 478 / 8e-157 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10039315 [exp] 372 / 7e-116 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085100 [exp] 878 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085000 [exp] 878 / 0 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084900 [exp] 862 / 0 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 861 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084701 [exp] 860 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211366 [exp] 858 / 0 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 855 / 0 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1) Potri.T085150 [exp] 851 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084601 [exp] 833 / 0 AT5G60900 519 / 3e-174 receptor-like protein kinase 1 (.1) Potri.T084800 [exp] 815 / 0 AT5G60900 485 / 3e-161 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10024195 pacid=23175761 polypeptide=Lus10024195 locus=Lus10024195.g ID=Lus10024195.BGIv1.0 annot-version=v1.0 ATGGCCTTCTCATCCATATTCCGCTTCTCAGTTTCACTTCTTCTTCTTCTTCAGCTGGCGATTTCAGTCAACTCACAACCCCGCCGCAACGTATCACTGG GATCGTCCATCACCGCCGATTCAAACGACTACTGGATATCCCCGTCAGGGGATTTCGCGTTCGGTTTTCAGCGAGTGAACAACAGTACTACCAATGGCTT CTTGGCAGTCATAGTGTTCGACAAAATGCCTGAAAAAACAATCCTCTGGTCCGCCAACCGTAACAACTTGGTTCCACGTGGATCCACCGTCCAGCTCACC TCCGACGGCCGACTCGTCCTCGCCGATCCATCAGGCAGAGAAATCTGGACCCCCATCGACAGCCCCGCCGCTTCCTATGCAGCCATGCTCGACACTGGGA ATTTCGTGCTGGCAGGCCGAGATTCTTCCACTCTGTGGGAGAGCTTCGATGAGCCTACTGACACTCTTTTACCGACTCAGATACTGAACCGAGGATCACA ATTGATAGCTAAATACTCGCGCACGAATCACTCGGTAGGAAGATTCAAGTTCATTCTGCAAAACGATGGCTATTTGGGGCAGTTCACCACCGCTTATCCA CAAATGGGGAGCAATTTCGGTTACTGGAATTTCCCAAGTCCTGCACCGTTAGGCCACAGATTGGTTTTCAACCTGTCAGGATTCATGTACTTAGCTTCCA GCAATGGATCTATTCTTAGCTATGTGTTCAGGAATGGAGAATCGAATCAGGAGTTTTACCAGAGGGTAACCCTTGATTTCGATGGGGTTCTTAGGTACTA TGTGTACCCAAAGGGGAATGGAAACCAATGGACTATTTCGTACTTTCAGCCATTGAATCTCTGCATACAGGTGATGGGAAAGACAGGCAGCGGAGCTTGC GGTTACAACAGTTACTGTCAGTTGGGAGACGATCAGAATCCGATCTGCAAGTGCCCTCAGGGTTATGTGTTACTGGACAAATCCGACGAGAACAAGGGGT GCATTCAGGATTTCGCTCCTCAGGACTGTCGTCTCGATGAGAGCGACTCGTTTGATATTGTGGTGATGCCTAATGCGGATTGGGTGGATGGAGAGTACAC GAATCTGGAGTCTTACACCGAGGATATGTGTCGAAGAGCTTGTTTGAGTGATTGCCAGTGTGATGCTGCAATCTATGGCCGTGGGATTTGTTGGAAAAAG AGAATGCCTTTGTCGAATGGAAGAGTGGATGCCTTAGTTGGAGTTAAAGCATTGATCAAAATAAGGAAGTCGAATTCCACCGCTTCGTCATCCTCCCCTC CAGAAAAGAATAAGAATAAGAAAGATCAGTCAGCTTTGATCATCATTGGTTCAGTGCTTTTAAGCACTTCGGGTTTAATCAATATTCTCCTTCTATCAGG AGCAGCTTTTTTGTATCTTTCCAAGCAGAGGGAGAATCAAGGAAGAAGAAGCAGCATTGTTTCAGTGGATTTACAGGAAAAAGATAGCTTCTTGTCTACA AATCTTCACAGATTCTCATTCAGTCAGCTTGAATTAGCAACAGGAATGTTCAAGGAAGTGCTGGGAAGCGGTGCATCAGGAACTGTTTACAAAGGAATTC TCCCTAATAATAATAAACAGCTCGTTGCAGTGAAAAAGCTAGACAAGATGTTGAACAAAACCCAGGAGGATCAGGAATTCGCCACCGAAGTGAAAGTAAT TGCCGGAACCAACCATAGAAACCTGGTGAAGCTCGTCGGGTTCTGCAACGAAGGCCAGCACCGAATTCTAGTCTACGAGTTCATGAGCAATGGCTCGTTG GCCGATTTCTTATTCAGAGACCAGCATTCAAGGCCTAGTTGGCACACAAGGATCGAGATAGCGTATGCAGTCGCGAGGGGGCTCGTATACCTCCACGACG AATGCAGCACGCAGATCATACACTGCGACATAAAGCCGCAGAATATCCTTCTCGACGAGTTCCTGACAGCGAAGATCTCCGATTTCGGGCTGGCCAAGCT TCTGAAGGCGGACCAGACTCGGACGATGACTCTGATCAGGGGAACCAGAGGGTACGTGGCTCCAGAATGGTTCAAGAACATGGCCATTACGGCAAAAGTC GATGTCCACAGCTTTGGGATTCTGCTGCTGGAGCTGGTTTGCTGCAGGAAGAACCTGAAGATGGATGTTACAAGTGAAGATGAGATTATACTTTCGGATT GGGCGGCCGATTGCTATATGGAAGGGAAGCTGCACAAGGTTGTGGAGGAGGATATGGAAGCTGTTGAGGATTTGGGGAGAGTGGAGAGATTTGTGAAAAT TGCAATGTGGTGCTTGCAGGATGATCCATATCTAAGGCCAGGTATGAAGAAAGTTGTTCAGATGCTGGAAGGTTCTTTGCAGGTTTGTGATCCTCCTAAT CCTGCTTCATTTATCAGCAACGTTTGA
AA sequence Show only first row Show all	>Lus10024195 pacid=23175761 polypeptide=Lus10024195 locus=Lus10024195.g ID=Lus10024195.BGIv1.0 annot-version=v1.0 MAFSSIFRFSVSLLLLLQLAISVNSQPRRNVSLGSSITADSNDYWISPSGDFAFGFQRVNNSTTNGFLAVIVFDKMPEKTILWSANRNNLVPRGSTVQLT SDGRLVLADPSGREIWTPIDSPAASYAAMLDTGNFVLAGRDSSTLWESFDEPTDTLLPTQILNRGSQLIAKYSRTNHSVGRFKFILQNDGYLGQFTTAYP QMGSNFGYWNFPSPAPLGHRLVFNLSGFMYLASSNGSILSYVFRNGESNQEFYQRVTLDFDGVLRYYVYPKGNGNQWTISYFQPLNLCIQVMGKTGSGAC GYNSYCQLGDDQNPICKCPQGYVLLDKSDENKGCIQDFAPQDCRLDESDSFDIVVMPNADWVDGEYTNLESYTEDMCRRACLSDCQCDAAIYGRGICWKK RMPLSNGRVDALVGVKALIKIRKSNSTASSSSPPEKNKNKKDQSALIIIGSVLLSTSGLINILLLSGAAFLYLSKQRENQGRRSSIVSVDLQEKDSFLST NLHRFSFSQLELATGMFKEVLGSGASGTVYKGILPNNNKQLVAVKKLDKMLNKTQEDQEFATEVKVIAGTNHRNLVKLVGFCNEGQHRILVYEFMSNGSL ADFLFRDQHSRPSWHTRIEIAYAVARGLVYLHDECSTQIIHCDIKPQNILLDEFLTAKISDFGLAKLLKADQTRTMTLIRGTRGYVAPEWFKNMAITAKV DVHSFGILLLELVCCRKNLKMDVTSEDEIILSDWAADCYMEGKLHKVVEEDMEAVEDLGRVERFVKIAMWCLQDDPYLRPGMKKVVQMLEGSLQVCDPPN PASFISNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10024195 [exp]	0	1
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	2.0	0.9109
					Lus10037930 [exp]	4.4	0.8539
AT1G11340			S-locus lectin protein kinase ...		Lus10030768 [exp]	6.9	0.8545
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10015338 [exp]	11.7	0.8436
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	12.3	0.8863
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10014411 [exp]	13.4	0.8851
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	14.7	0.8850
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017600 [exp]	15.2	0.8844
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10033561 [exp]	17.9	0.8717
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	19.4	0.8564

Compare expression of checked genes

Lus10024195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.