Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34980 351 / 1e-121 SETH1 phosphatidylinositolglycan synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009915 [exp] 473 / 1e-169 AT2G34980 383 / 2e-134 phosphatidylinositolglycan synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074300 [exp] 402 / 5e-142 AT2G34980 383 / 2e-134 phosphatidylinositolglycan synthase family protein (.1) Potri.001G160600 [exp] 400 / 5e-141 AT2G34980 357 / 5e-124 phosphatidylinositolglycan synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06432 [flax] [poplar] GPI2 Phosphatidylinositol N-acetylglucosaminyltransferase
Representative CDS sequence Show only first row Show all	>Lus10024198 pacid=23175725 polypeptide=Lus10024198 locus=Lus10024198.g ID=Lus10024198.BGIv1.0 annot-version=v1.0 ATGAATGTGGGGGTCAGCGATTCTCCTCCTCGGCTCGATAAGTGGAGGAAAGCTGCGTATGGGGGAATGCAGCCTGGTTTTGATGACAACCACACAGACA AGTCCTTCCTCGAAGACATGGTCATGAATGCCAACGTGGTGAAAAGGGACATAAAGAAGGTTATGTTAGACTCCGTTTCCATCTCTCAGTATCTGTGCAT TGTTTCCCTTGTTGTCTTGGTATGGACCTACACCCTTCAGTCGACCCTAGACGAGTATTCCCTCTTACTTCTCGACCTCGGTCTTCTTGGTTCCGGTTTC CTTGTCCTGCTACTAACCAAAGAGATGTACTCCCTCGCTCTTTTTTCCCACTATCTCCTTAACATAGGCTTCTTCACCACCGGATTGTATGTTCTATCGC CTATCTACAACACTCTGACCCGGTCCATTAGCTCGGACACGATCTGGGCTGTGACTGTTTCTCTTGTTGTTCTTCACCTCTTCCTCCATGACTATTCAGG ATGCCCTGTAGGGGCTCCAGGAGCCTTGAAAAATTCTCCAAACTTGGTCAGTTGTGTTGCTTTGAATGCTTCGGTCGTTGCTTCAGTTTTTATCGCCTCC CGCCTCCCTTCGAGGGTTCATGTGTTTGCAGTCATGCTGTTCTCTATGCAAGTCTTCCTATTCGCTCCATTCGTAACTTACTGTATCAAGAAATGTTCTT TCACCTTGCACCTCGTCTTCTCCTTTGGGTTGATGGCCTTGACACTAGGCTTTGTCTTCGCACTACACAAGCTACTGTTTGTAGTGTTATTAGGTTTGTT AGTATTCGTTAGTATTGTTTGTCCATATTGGTTAATACGAATCCAGGAATACAAGTTTGAGATCAATGGTCCTTGGGATGAAGCTAAGCTTTGTTTTGAC ATAAGGGATTGA
AA sequence Show only first row Show all	>Lus10024198 pacid=23175725 polypeptide=Lus10024198 locus=Lus10024198.g ID=Lus10024198.BGIv1.0 annot-version=v1.0 MNVGVSDSPPRLDKWRKAAYGGMQPGFDDNHTDKSFLEDMVMNANVVKRDIKKVMLDSVSISQYLCIVSLVVLVWTYTLQSTLDEYSLLLLDLGLLGSGF LVLLLTKEMYSLALFSHYLLNIGFFTTGLYVLSPIYNTLTRSISSDTIWAVTVSLVVLHLFLHDYSGCPVGAPGALKNSPNLVSCVALNASVVASVFIAS RLPSRVHVFAVMLFSMQVFLFAPFVTYCIKKCSFTLHLVFSFGLMALTLGFVFALHKLLFVVLLGLLVFVSIVCPYWLIRIQEYKFEINGPWDEAKLCFD IRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Lus10024198 [exp]	0	1
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034655 [exp]	8.9	0.7625
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	11.0	0.8033
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	14.0	0.7578
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	16.6	0.7798
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10029162 [exp]	21.3	0.7633
AT5G66450			Phosphatidic acid phosphatase ...		Lus10041774 [exp]	21.6	0.7745
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Lus10021492 [exp]	23.3	0.7311
AT4G17440			Protein of unknown function (D...		Lus10004378 [exp]	26.2	0.7611
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10020691 [exp]	26.6	0.7519
AT1G20180			Protein of unknown function (D...		Lus10005612 [exp]	27.5	0.7095

Compare expression of checked genes

Lus10024198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.