Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09040 1017 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 464 / 9e-147 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 439 / 1e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 443 / 1e-140 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 440 / 1e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 424 / 6e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 420 / 1e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 415 / 6e-131 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 415 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 411 / 6e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009913 [exp] 1914 / 0 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 445 / 1e-142 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 450 / 1e-141 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 433 / 2e-138 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 436 / 2e-137 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 423 / 7e-136 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 428 / 3e-134 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 422 / 3e-133 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 419 / 5e-131 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G187800 [exp] 1301 / 0 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 501 / 6e-163 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 474 / 1e-150 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G129100 [exp] 452 / 3e-142 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 447 / 1e-141 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 439 / 9e-138 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G068600 [exp] 436 / 2e-136 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G215500 [exp] 427 / 6e-134 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 422 / 6e-133 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 417 / 9e-132 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024199 pacid=23175759 polypeptide=Lus10024199 locus=Lus10024199.g ID=Lus10024199.BGIv1.0 annot-version=v1.0 ATGTATTGCAGTCGCCGACACTTCTGCAGAACGTCTCCTGCCTTGCACGCTCGCTACTTTTCCGGCCGACGCACCTCCTCAGCTTCTCCACTCAATCCAC CCTACACATATGACGAGCTGTTAGAAGCCTGCCTTCTACAATGCAAGAAAGTCAAAGCCCACTACCCGTTCGACGAAACTCCTCACAGAGTTTCTGCGAT TTCAACAACCGGGAAACTCATTCACAGCTACGCTATCAAGCTAGGGGTTTCGACAGAAAAGTTCCTAGGAAACGCCATTCTCGATCTCTATACCAAGTGT GGCAATGTCGAATTCGCGGAGAAAGCGTTTGACAGGCTTGAGAATAGGGATGTGTTGGCTTGGAATTCTATTCTATCACTTCATTTGAAAAGTTCATCGA CATGCTCGGTTGTGCGATCTTTTGGGTTGTTATGGAACGAAGGGGTTCGTCCAAATGAGTACACTTTTGCTATTGCATTGTCTGCTTGTGCAAGACTGGG CAGTGGGGAATGTGGTAGACAAGTTCACAGTAATCTAGTAAAGATGGGGTTGGAATCGAGTTCTTTCTCCCAGGGTGCCCTCATTGATATGTATGCTAAG AGTAATCAAATGGCGCAAGCTCGAAAAGTTTTTGATGTAGCGGGCAAAATGGATACAGTTTCTTGGACTTCATTGATTGCTGGCTACGTGCAAGCTGGAT TACCTGGAGAGGCAATACAAATTTTTGAAGAGATGCGAAAAGATGGAATGGAGCCTGATCAAGTGGCACTCATCACGGTTATGAATGCATATCTTAGTTT GGGAAAGCTTGATGATGCGTCTGGGTTGTTCTTCCAGATGTCAAACCCAAATGTTGTAGGTTGGAATGTGATTATGTCAGGGTATGCTAAGCAAGGATAC GAGACTGAAGCTCTAGAATTGTTTCAAAAGATGAGAAGATCTGGTGTCAAACCCACTAGGTCAACATTAGGAAGCATATTAACTGTAATCGGTAACATGG CTACTCTTGATCATGGTTTGCTACTTCATGGGGAGGCAATGAAATTGGGACTGTATTCTAATGTCTATGTAGGAAGTTCTTTGATTAGTATGTATGGGAA GTGTGCGAAACCGGCAGCAGCTAAGAAAGTATTTGATGATCTACAAGTGAAAAATCTTGTTTTGTGGAATTCAATGCTCGGAGGTTTTGCCCAAAATGGA TATCCTTATGAAGTGGTGGACTTGTTCTTTAACATGAAGAGCTATGGATTTCACCCGGATGATTTTACATTTACCAGCATTCTGAGTGCTTGTGCTTGCC TCCAATTTCTAGAGGTGGGTCGACAGTTACATTCTGTCATTATAAAGAACAAACTAGCATCAAATTTATTTGTGGGAAATGCATTGATAGACATGTACGC TAAAGCTGGGAATCTTCAAGATGCAAGGCAGCAATTTGAGCTGGTCAAGAATAGAGATAACATCTCTTGGAATGCAATCATTGTTGGATACGTACAGGAA GAAAATGAAGATGAAGCATTTAGGTTATTTCAGCTGATGAACGTGAATAACATTCTACCAGATGAGGTCTCCCTCGCAAGTATTCTTAGTGCTTGTGCAA GTGTCAAAGGGATCGAACAAGGCAAACAGGTGCACTGTCTCTCAGTGAAAAATGGTCTGGAAACAGGTCTATATGCCGGAAGCTCCCTTATTGACATGTA TGTGAAGTGTGAGAATATAGAGTCTGCTGACAAGATTCTTGCTTGCTTGCCTAAACGGAGTGTTGTCTCTATCAATGCATTGATTGCAGGATATGCTTCA TGTAATATCCACTGTCTTGTATTCAAGACAGGCCTTCCGCTGGATGATGAATATTTGGCCGTCTCTCTTGTAAGCATGTACATGAGTGCTCTAAGGAAAA ACGATGCTATTCTTCTATTCTCAGAACTCTCCAACCTAAGAAGTACTATCTTCTGGACTGCCGTGATTTCGGGACTTACACAAAATGACTGTAGCGAGGA GGCTCTACGATTCTACCAAAAAATGCATGGTTCCGATTTCTTACCTGATCAAGCAGTATTTGTGAGCATCCTTAAAGCATGTGCAGTCCTATCATCTGCG AGAGATGGTACAATGATCCATGCTCTAATTTGCCGAACCGGTCTTGATTCAGATGAATTGACTTGTAGTGCTCTTGTCGACATGTACGCTAAATGTGGGA ATGTGGAGAGTTCAATGCAAGTCTTTAACGAACTTGGTAGTAAAGAAAAAGTCATCTCTTGGAACTCTATGATAGTCGGATTTGCTAAAAATGGTTATGC TGAAGATGCCTTGAGAGTATTCTGGGAGATGAAGCATAGGAATGTTAAACCTGATGAGATCACGATTCTTTGTGTCCTTACTGCTTGTAACCATGCAGGA ATAGTTCCTGAAGGTCGTCGTATCTTCGACATGATGTTCAGCCATTACAGGATTCAGCCTAGAATAGACCACTGTGCCTGCATGGTTGATCTTCTAGGCA GATCGGGGTTTCTCGAAGAAGCTGAAGAGTTCATCAGGAAACTCAACTTGGAATCTGATGCCAAGATTTGGGCTACAATGCTTGCAGCTTGCAGAACACA TGGGGATGAAAAGAGGGGACAACGAGCCGCTGAGGAGCTCATTCAGCTTGACCCCCAAAATTCATCACCCTATGTGCTTCTTTCTAACATTCACGCAGCA TCAGGGAATTGGGAGGAGGTTATGACTTTGAGGAGGTCAATGAAAGAGAAAAGATTAAAGAAGTTACCAGGCTGTAGCTGGATTACTGTTGGACAAACGA CAGACTTTTTCGTTGCAGGAGAGATCTCTCATCCTAGTGCAGATGGCATTGGCTTGATTTTGAAAGATTTAACAGCATTGATGAAAGACGTGCACTTTTC TCCAATTGATTTCCTTTACGACGTTGAAGACTGA
AA sequence Show only first row Show all	>Lus10024199 pacid=23175759 polypeptide=Lus10024199 locus=Lus10024199.g ID=Lus10024199.BGIv1.0 annot-version=v1.0 MYCSRRHFCRTSPALHARYFSGRRTSSASPLNPPYTYDELLEACLLQCKKVKAHYPFDETPHRVSAISTTGKLIHSYAIKLGVSTEKFLGNAILDLYTKC GNVEFAEKAFDRLENRDVLAWNSILSLHLKSSSTCSVVRSFGLLWNEGVRPNEYTFAIALSACARLGSGECGRQVHSNLVKMGLESSSFSQGALIDMYAK SNQMAQARKVFDVAGKMDTVSWTSLIAGYVQAGLPGEAIQIFEEMRKDGMEPDQVALITVMNAYLSLGKLDDASGLFFQMSNPNVVGWNVIMSGYAKQGY ETEALELFQKMRRSGVKPTRSTLGSILTVIGNMATLDHGLLLHGEAMKLGLYSNVYVGSSLISMYGKCAKPAAAKKVFDDLQVKNLVLWNSMLGGFAQNG YPYEVVDLFFNMKSYGFHPDDFTFTSILSACACLQFLEVGRQLHSVIIKNKLASNLFVGNALIDMYAKAGNLQDARQQFELVKNRDNISWNAIIVGYVQE ENEDEAFRLFQLMNVNNILPDEVSLASILSACASVKGIEQGKQVHCLSVKNGLETGLYAGSSLIDMYVKCENIESADKILACLPKRSVVSINALIAGYAS CNIHCLVFKTGLPLDDEYLAVSLVSMYMSALRKNDAILLFSELSNLRSTIFWTAVISGLTQNDCSEEALRFYQKMHGSDFLPDQAVFVSILKACAVLSSA RDGTMIHALICRTGLDSDELTCSALVDMYAKCGNVESSMQVFNELGSKEKVISWNSMIVGFAKNGYAEDALRVFWEMKHRNVKPDEITILCVLTACNHAG IVPEGRRIFDMMFSHYRIQPRIDHCACMVDLLGRSGFLEEAEEFIRKLNLESDAKIWATMLAACRTHGDEKRGQRAAEELIQLDPQNSSPYVLLSNIHAA SGNWEEVMTLRRSMKEKRLKKLPGCSWITVGQTTDFFVAGEISHPSADGIGLILKDLTALMKDVHFSPIDFLYDVED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10024199 [exp]	0	1
AT5G09840			Putative endonuclease or glyco...		Lus10020866 [exp]	2.0	0.9520
AT2G22400			S-adenosyl-L-methionine-depend...		Lus10020217 [exp]	4.0	0.9514
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	5.2	0.9506
AT5G64420			DNA polymerase V family (.1)		Lus10041274 [exp]	6.0	0.9420
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	7.7	0.9443
AT3G55160			unknown protein		Lus10015366 [exp]	8.0	0.9466
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	11.7	0.9400
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031111 [exp]	11.8	0.9418
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	17.2	0.9382
AT4G28200			unknown protein		Lus10003351 [exp]	18.0	0.9192

Compare expression of checked genes

Lus10024199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.