Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40660 325 / 3e-111 ATP12 protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009910 [exp] 511 / 0 AT5G40660 421 / 2e-148 ATP12 protein-related (.1) Lus10000142 [exp] 141 / 2e-42 AT5G40660 110 / 6e-31 ATP12 protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338200 [exp] 344 / 1e-118 AT5G40660 303 / 4e-102 ATP12 protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07542 [flax] [poplar] ATP12 ATP12 chaperone protein
Representative CDS sequence Show only first row Show all	>Lus10024202 pacid=23175778 polypeptide=Lus10024202 locus=Lus10024202.g ID=Lus10024202.BGIv1.0 annot-version=v1.0 ATGGCAGCTTTCTTTTTGAACGGAACACGGAACTTGTTAAAAACACCCAAGCAACTAGCACCACTGCCGACGTCACTTTTCGGCCGTCACTTCAACTCAA CAGCCGCTGCACATCAGTCGCCGGATCCGGAAGGACAGTCTACTACTTCGTCTTCTTTCGCTTTCGGGGATAGCGACAATATTCTCGTCAAGGGCCCGAG GGATGGTGGTGTGTCGTCGTCGGTGACGATGCCGATGTCGTTTATGACGGGGTCGATAGTAGGGAAGCAATTCTACAAGCAAGTGACGAGGAGGCAGGCT GACGACGGTAATAGATGGACGGTTATGCTCGATTACAGGACGCTCAAGACTCCTTCCAAAAGGGCCCTAAAGCTGCCGGATCTGTCTCTTGCTAAAGCGA TTGCTGCTGAGTGGGATTGCCAGCAAACAGATGGAATCAGGCCATTCACAATGCCCCTTATGAGGCTTGCTTGTACTGCGTTGGACTTGGTTTTCTGTCG TGCTCCTTGGGATAATAATCTAACCAGTGACGTCTATGATCGGCAGGTGGAAAAAATTGATCCTTTGCTTGAATGGGTGAAGTCAGAATTTGGGTATAAG CCAGTTGTCTACTCCAGTTTCTTTGGCAGGAAGCAGGACGAAGGTCTAGTGAAGGCCATGGAAAACCTTCTCAAAGCTACAACTGATTGTGAACTGGCAG CACTGGATGCGCTTGCATCTGCAGCACATTCATTAGTAAGCGGTGCTGGGATATTCTGCGGGAAATTGGACATTGACGAAGCAATTGAGCTGATTAGACT CGAAGAAGATGTGCAGGTTGACAAATGGGGTTTAGTTGAAGGAGGACATGATTTGGACATTGCTGATCTGAAGAAGCCAGCTGCTATCTATGATTACATT GATGTAATAATTCCCGAGCAGTAG
AA sequence Show only first row Show all	>Lus10024202 pacid=23175778 polypeptide=Lus10024202 locus=Lus10024202.g ID=Lus10024202.BGIv1.0 annot-version=v1.0 MAAFFLNGTRNLLKTPKQLAPLPTSLFGRHFNSTAAAHQSPDPEGQSTTSSSFAFGDSDNILVKGPRDGGVSSSVTMPMSFMTGSIVGKQFYKQVTRRQA DDGNRWTVMLDYRTLKTPSKRALKLPDLSLAKAIAAEWDCQQTDGIRPFTMPLMRLACTALDLVFCRAPWDNNLTSDVYDRQVEKIDPLLEWVKSEFGYK PVVYSSFFGRKQDEGLVKAMENLLKATTDCELAALDALASAAHSLVSGAGIFCGKLDIDEAIELIRLEEDVQVDKWGLVEGGHDLDIADLKKPAAIYDYI DVIIPEQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40660			ATP12 protein-related (.1)		Lus10024202 [exp]	0	1
AT5G40660			ATP12 protein-related (.1)		Lus10000142 [exp]	2.4	0.8662
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	4.2	0.8674
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	5.1	0.8664
AT5G25800			Polynucleotidyl transferase, r...		Lus10042779 [exp]	5.7	0.8628
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10036022 [exp]	7.7	0.8610
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034109 [exp]	8.0	0.7958
AT2G40430			unknown protein		Lus10037530 [exp]	8.4	0.8569
AT4G31520			SDA1 family protein (.1)		Lus10028318 [exp]	8.9	0.8466
AT3G54460			SNF2 domain-containing protein...		Lus10024158 [exp]	11.0	0.8544
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	11.5	0.8582

Compare expression of checked genes

Lus10024202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.