Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24840 991 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009908 [exp] 1398 / 0 AT4G24840 1062 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G096100 [exp] 1084 / 0 AT4G24840 1041 / 0.0 unknown protein Potri.015G094000 [exp] 1040 / 0 AT4G24840 1018 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12022 [flax] [poplar] DUF3510 Domain of unknown function (DUF3510) CL0295 [flax] [poplar] Vps51 PF06148 [flax] [poplar] COG2 COG (conserved oligomeric Golgi) complex component, COG2
Representative CDS sequence Show only first row Show all	>Lus10024203 pacid=23175723 polypeptide=Lus10024203 locus=Lus10024203.g ID=Lus10024203.BGIv1.0 annot-version=v1.0 ATGGCGGATCCCATCCCCAATCAACCGCCACCAAGATCCGCTACTGATCTCTTCGCTGAGCCACTTGATGGCCATCCTCTATGGTTCAAGCCCAACCTCT TCCTCGCCCCCAACTTCGACACCGAATCCTTCATATCCGATCTCCGTACCTTTGTTCCCTTCGACACGCTTCGCTCGGAGCTTCAGAGCCACTTGGCTTC CCTCAACCACGAGCTCATCGACCTAATCAACCGCGACTACGCTGATTTCGTAAATCTCAGCACCAAGCTTGTCGATGTCGACGCCGCCGTCGTGCGGATG CGGGCTCCGCTTCTGGAGCTACGGGAGAAGATTGATGGATTCAGAGGCAGCGTCCAAAGTTCGCTTGTTTCTCTCAGAAACGGATTGCAGCAGAGATCGG AAGCTGCTGCTGCTCGGGAGGTCTTGGAATTACTGTTGGACACGTTCCACGTTGTTTCTAAGGTTGAGAAACTGATTAAGGAACTACCAAGCGTTCCTTC TGATTTGTCGAATGGAGATGCAAGTTTGATTGAGAAGAATTCTCTGATCAATGGCAATTATGTGCAACCAACTGAGAATGGAGCGACTCTTAGAGAAACA CAGAGCATGCTGCTGGAGAGAATTGCAAGCGAGATGAATCGGCTGAAGTTCTACATTGCTCATGCACAGAATCTTCCTTTCATTGATAATATGGAAAAGA GGATTCAAAGTGCAAGTCAGTTACTGGATGCCAGTTTAGGACATTGTTTTGTTAACGGGCTGGAAAATCACGACGACAATGCCATTTACAATTGCCTACG TGCATATGCTGCCATTGACAATACCACAAGTGCTGAAGAGATATTCCGCACCACGATTGTTGCTCCATTAATTCATAAGATAATCCAACATGGACCTTCA GCAGCAGGTTCCGGGGTTTCATCAGTTACACTTCAGACTGATTATCAGCAGATTGAGCAATGCATCGAGAAAGACTGTAAATTCCTCCTAGACATTACTT CTGCAGAAAATTCTGGGCTGCACGTTTTCAACTTCCTGGCCAACTCTATTCTGAAAGAAGTTCTTTCTGCAATTCAGAAGGGAAAGCCCACTGCTTTCTC ACCTGGTAGACCTTTGGAATTCCTAAGAAATTACAAATCAAGCTTAGATTTCTTGGCATACCTTGAAGGCTATTGTCCATCCAAATCTGCTGCTACAAAA TTCAGAGCAGAAGCAGTATATGCTACATTCATGAAACAATGGAATATTGGAGTTTATTTCTCCTTGAGATTTCAGGAGATAGCTGGTGATTTGGATTCTG CCCTTGCAACAACAAGCCTTGTCCCAGTTACTCAGTCTGATGCCATGATCACCCCAGAATTAACATTGAAACAGAGTGCTTCTCTTCTGCAGAGTCTGAG ATCTTGTTGGAAGGAAGACGTTCTAATCATTTCTTGCTCTGACAAATTTCTGCGCTTAACCTTTCAGCTTTTGTCAAGATATTCAAATTGGCTGACATCT GGGCTGGCTGCACGGAAGTCTGGTGGTGCATTCTCACATCCTGGATCTGAATGGGCAACGTCAGCTGTTCTCGATGATTTTGTCTATGTGATCCACGACA TTAAGAATCTGAGCACAGAGGTCTGCGGGAGTTACCTTGAGCATATTGTGAAAACCTTATCTTGCTGTCCCACAGATGTCATTGATCTGATAAGGCAAAG CATTGCGCAAGGTGGAAAATCTTTAGATGATTTAGCACCGCTAGTGATGAATGCTGTTATAGACACTCTGAAGGATAAGGCTGAAGAGGACCTGAAACAA TTGAAGGGGATTACTGCAACATACAGGATGACAAATAAACCCCTTCCGGTCAGACATTCCCCTTATGTGTCAGGGCTCCTGCGTCCATTAAAGGATTTTC TGCAAGGGGAGAGAGCTACAAGTTACCTGTCAGAGGAAGCTAGGAAAGAAATACTCGTTGGTACTGCAACCACAATTACCGACTGCTATAGCAAATTAGC TACTGAACTCGTTAGTCTGGCAAGGAAAACAGAGTCATCGCTGCAGAAAATAAGGCAGGGGGCGCAAAGACGTGCAGGAACAAGCTCAGATGTGGTGGAC AACAGCGTATCAGACACTGACAAAATATGCATGCAGTTGTTCTTGGACATTCAGGAATATGGACGCAATCTTGGAGGACTTGGGGTGAATGCAGCCGATA TCCCATCCTATCGTTCATTCTGGGAATGCGTTGCTCCCCCAAGTAGGCAAAGCGTGATTGATTGGATTAGCTCCTGA
AA sequence Show only first row Show all	>Lus10024203 pacid=23175723 polypeptide=Lus10024203 locus=Lus10024203.g ID=Lus10024203.BGIv1.0 annot-version=v1.0 MADPIPNQPPPRSATDLFAEPLDGHPLWFKPNLFLAPNFDTESFISDLRTFVPFDTLRSELQSHLASLNHELIDLINRDYADFVNLSTKLVDVDAAVVRM RAPLLELREKIDGFRGSVQSSLVSLRNGLQQRSEAAAAREVLELLLDTFHVVSKVEKLIKELPSVPSDLSNGDASLIEKNSLINGNYVQPTENGATLRET QSMLLERIASEMNRLKFYIAHAQNLPFIDNMEKRIQSASQLLDASLGHCFVNGLENHDDNAIYNCLRAYAAIDNTTSAEEIFRTTIVAPLIHKIIQHGPS AAGSGVSSVTLQTDYQQIEQCIEKDCKFLLDITSAENSGLHVFNFLANSILKEVLSAIQKGKPTAFSPGRPLEFLRNYKSSLDFLAYLEGYCPSKSAATK FRAEAVYATFMKQWNIGVYFSLRFQEIAGDLDSALATTSLVPVTQSDAMITPELTLKQSASLLQSLRSCWKEDVLIISCSDKFLRLTFQLLSRYSNWLTS GLAARKSGGAFSHPGSEWATSAVLDDFVYVIHDIKNLSTEVCGSYLEHIVKTLSCCPTDVIDLIRQSIAQGGKSLDDLAPLVMNAVIDTLKDKAEEDLKQ LKGITATYRMTNKPLPVRHSPYVSGLLRPLKDFLQGERATSYLSEEARKEILVGTATTITDCYSKLATELVSLARKTESSLQKIRQGAQRRAGTSSDVVD NSVSDTDKICMQLFLDIQEYGRNLGGLGVNAADIPSYRSFWECVAPPSRQSVIDWISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24840			unknown protein		Lus10024203 [exp]	0	1
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10037312 [exp]	2.4	0.7502
					Lus10039535 [exp]	5.7	0.7219
AT1G22870			Protein kinase family protein ...		Lus10007901 [exp]	18.5	0.7583
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	25.0	0.7551
AT1G46912			F-box associated ubiquitinatio...		Lus10003349 [exp]	32.0	0.6739
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10036520 [exp]	35.5	0.7490
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	47.1	0.7416
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10010069 [exp]	48.3	0.7441
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008204 [exp]	48.7	0.6626
AT5G45190			Cyclin family protein (.1.2)		Lus10041213 [exp]	49.9	0.7416

Compare expression of checked genes

Lus10024203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.