Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06850 227 / 2e-72 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT2G40620 214 / 3e-67 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G31370 159 / 7e-46 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT1G06070 153 / 2e-43 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G38900 128 / 3e-33 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G43700 119 / 3e-31 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT2G21230 113 / 5e-28 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT3G58120 74 / 7e-15 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G42380 73 / 2e-14 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT2G12900 59 / 7e-10 bZIP AtbZIP33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009907 [exp] 488 / 9e-176 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2) Lus10042211 [exp] 358 / 1e-123 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008605 [exp] 355 / 2e-122 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10012881 [exp] 209 / 2e-65 AT2G40620 290 / 7e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10030531 [exp] 205 / 1e-62 AT2G40620 286 / 4e-93 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10018899 [exp] 146 / 2e-41 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10028595 [exp] 142 / 4e-40 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10008150 [exp] 140 / 4e-40 AT1G06070 346 / 4e-119 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10029773 [exp] 136 / 1e-37 AT1G43700 311 / 6e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G130000 [exp] 343 / 3e-117 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G156900 [exp] 331 / 2e-112 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G091400 [exp] 219 / 9e-70 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G069500 [exp] 153 / 5e-44 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.017G027400 [exp] 155 / 6e-44 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G190700 [exp] 150 / 5e-43 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.007G130800 [exp] 147 / 3e-41 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G125400 [exp] 132 / 2e-34 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.004G163800 [exp] 130 / 1e-33 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.013G124400 [exp] 72 / 5e-14 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10024204 pacid=23175782 polypeptide=Lus10024204 locus=Lus10024204.g ID=Lus10024204.BGIv1.0 annot-version=v1.0 ATGAGCTTCCGCTTCCCTGACGACATGACCATGATGATGATGGATCTGTCCCCTTCCGGTCCAATGACCCCCGGCGCCGGCGGCGGAGACGGCGGATCTT CCACTTGCAGCCTCGAGGAGATTGGATCCGAGGACGACCTCTTCTCTACCTACATTGACGTTGATAAGCTTACTGGAGGTGTCAACAATTCTGCGGATCA GAGTAATTCCACCACGCCGTCCTCCAGGCCGGCTACCAAGCACCGCCACAGCAATTCCGTCGACGGCAGCGGTATGTTCGGCGAGATAATGGATGCTAAG AAAGCTATGCCTCCGGAGAAGTTGGCTGATCTGTGGAACGTCGATCCCAAACGCGCCAAAAGGATACTTGCAAACAGGCAATCAGCTGCTCGCTCAAAAG AGCGAAAGGCACGTTACATTATAGAACTTGAGCGCAAGGTTCAGACCCTCCAAACAGAAGCCACCACTCTATCTGCTCAGCTCACTCTGTTCCAGAGGGA CACGTCGGGTTTGAGTACAGAAAACACAGAGCTTAAGCTTCGATTGCAAGCTTTGGAACAGCAGGCTCAGTTACGTGATGCTTTGAATGATGCACTGAAG ACAGAAGTTGAGAGGCTAAAAGCAGCTACAGGAGAAATGATGAGTCACTCGGAATCATTTAACTTGGGAATGCACCAAATGCCTTACTCATCATCGAACT TCTTCCCATTGCCTCCTCAACAATCTGGACATACCCGGAACATGCAGTTACCACACTTTTCTCAGCACATGCAGCAAACAAACTCTCACCATCTCTCTGA TGCAATGCAAAGCGAGTCTCTAGCACGATTTCAGGGGCTCGACATCAGTAACAAAGGACAGCCGAACATAGTCAAGTCGGAAGGCTCGTCGATATGTGCC AGTGAAAGTAGCTCCACGTTCTGA
AA sequence Show only first row Show all	>Lus10024204 pacid=23175782 polypeptide=Lus10024204 locus=Lus10024204.g ID=Lus10024204.BGIv1.0 annot-version=v1.0 MSFRFPDDMTMMMMDLSPSGPMTPGAGGGDGGSSTCSLEEIGSEDDLFSTYIDVDKLTGGVNNSADQSNSTTPSSRPATKHRHSNSVDGSGMFGEIMDAK KAMPPEKLADLWNVDPKRAKRILANRQSAARSKERKARYIIELERKVQTLQTEATTLSAQLTLFQRDTSGLSTENTELKLRLQALEQQAQLRDALNDALK TEVERLKAATGEMMSHSESFNLGMHQMPYSSSNFFPLPPQQSGHTRNMQLPHFSQHMQQTNSHHLSDAMQSESLARFQGLDISNKGQPNIVKSEGSSICA SESSSTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10024204 [exp]	0	1
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10029253 [exp]	1.0	0.9127
AT5G48660			B-cell receptor-associated pro...		Lus10022777 [exp]	1.7	0.8838
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	3.7	0.8903
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10009907 [exp]	4.0	0.8761
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10007306 [exp]	4.0	0.8521
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10020121 [exp]	4.5	0.8698
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10034675 [exp]	4.9	0.8587
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10037998 [exp]	8.1	0.8189
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10005249 [exp]	9.6	0.8161
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	9.9	0.8581

Compare expression of checked genes

Lus10024204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.