Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14550 212 / 2e-69 Peroxidase superfamily protein (.1) AT1G14540 210 / 1e-68 Peroxidase superfamily protein (.1) AT5G05340 200 / 1e-64 Peroxidase superfamily protein (.1) AT5G58400 186 / 3e-59 Peroxidase superfamily protein (.1) AT5G58390 167 / 1e-51 Peroxidase superfamily protein (.1) AT4G36430 135 / 3e-39 Peroxidase superfamily protein (.1) AT2G18140 134 / 5e-39 Peroxidase superfamily protein (.1) AT5G66390 134 / 9e-39 Peroxidase superfamily protein (.1) AT2G18150 134 / 9e-39 Peroxidase superfamily protein (.1) AT3G50990 132 / 6e-38 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024209 [exp] 313 / 1e-108 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10009898 [exp] 222 / 2e-73 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10009900 [exp] 221 / 1e-72 AT1G14550 436 / 1e-154 Peroxidase superfamily protein (.1) Lus10009902 [exp] 218 / 1e-71 AT1G14550 441 / 8e-157 Peroxidase superfamily protein (.1) Lus10024208 [exp] 217 / 3e-71 AT1G14550 442 / 3e-157 Peroxidase superfamily protein (.1) Lus10030148 [exp] 195 / 4e-63 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10009933 [exp] 196 / 6e-63 AT5G05340 364 / 2e-126 Peroxidase superfamily protein (.1) Lus10034207 [exp] 181 / 4e-57 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10024207 [exp] 179 / 4e-57 AT1G14550 322 / 2e-110 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458700 [exp] 252 / 3e-85 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1) Potri.001G458900 [exp] 247 / 5e-83 AT1G14540 389 / 3e-136 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 222 / 3e-73 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 222 / 3e-73 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 220 / 2e-72 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 215 / 2e-70 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 215 / 2e-70 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.008G022248 [exp] 211 / 5e-69 AT1G14540 404 / 3e-142 Peroxidase superfamily protein (.1) Potri.008G022501 [exp] 211 / 9e-69 AT1G14550 434 / 3e-154 Peroxidase superfamily protein (.1) Potri.008G022232 [exp] 211 / 9e-69 AT1G14550 401 / 6e-141 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10024205 pacid=23175804 polypeptide=Lus10024205 locus=Lus10024205.g ID=Lus10024205.BGIv1.0 annot-version=v1.0 ATGGTACAACTGTTCGACAACAAAGGGTTGAGCGCACGTGACATGGTGGCCCTGTCTGGGTCCCACACGATCGGACAGGCGAGGTGCGTGACTTTCCGGG GGAGGATTTATAGTAACGGTTCGGATATAGACGCTAACTTTGCGAGCACGAGGAGAAGGCAGTGTCCTAATTCTTCTGATGGAAATGGAGATGGCAATTT GGCGGCTATGGATTTGGTCACTCCCAACTCTTTCGATAATAACTACTTCAGGAATCTGATGCAAAGGAGGGGGCTTCTCCAATCTGATCAGGTGCTTTTC AGCGGTGGGTCGACTGACGGAATAGTGCAAGAGTATAGTAGGAACCCCAGAGTTTTCACCTCCGATTTCGCGGCTGCTATGGTTCGGATGGGTGATATTG ACCCATTGACTGGTTCTCAGGGCCAAGTTCGCAGAGTTTGCAGCGTAGCCAACGCTTCCTGA
AA sequence Show only first row Show all	>Lus10024205 pacid=23175804 polypeptide=Lus10024205 locus=Lus10024205.g ID=Lus10024205.BGIv1.0 annot-version=v1.0 MVQLFDNKGLSARDMVALSGSHTIGQARCVTFRGRIYSNGSDIDANFASTRRRQCPNSSDGNGDGNLAAMDLVTPNSFDNNYFRNLMQRRGLLQSDQVLF SGGSTDGIVQEYSRNPRVFTSDFAAAMVRMGDIDPLTGSQGQVRRVCSVANAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14550			Peroxidase superfamily protein...		Lus10024205 [exp]	0	1
AT1G14550			Peroxidase superfamily protein...		Lus10024209 [exp]	1.0	0.9973
AT1G55230			Family of unknown function (DU...		Lus10013749 [exp]	2.4	0.9825
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10020714 [exp]	3.0	0.9756
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	3.5	0.9776
AT3G05950			RmlC-like cupins superfamily p...		Lus10032017 [exp]	4.9	0.9760
AT1G22810	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009468 [exp]	5.1	0.9607
					Lus10000527 [exp]	5.9	0.9779
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012583 [exp]	6.0	0.9784
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Lus10035670 [exp]	6.2	0.9792
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	6.7	0.9691

Compare expression of checked genes

Lus10024205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.