Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14550 294 / 1e-99 Peroxidase superfamily protein (.1) AT1G14540 285 / 5e-96 Peroxidase superfamily protein (.1) AT5G05340 282 / 9e-95 Peroxidase superfamily protein (.1) AT5G58400 262 / 6e-87 Peroxidase superfamily protein (.1) AT4G36430 260 / 5e-86 Peroxidase superfamily protein (.1) AT5G58390 256 / 6e-85 Peroxidase superfamily protein (.1) AT2G18150 247 / 6e-81 Peroxidase superfamily protein (.1) AT5G66390 243 / 3e-79 Peroxidase superfamily protein (.1) AT2G18140 239 / 1e-77 Peroxidase superfamily protein (.1) AT5G06720 235 / 3e-76 ATPA2 peroxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009899 [exp] 513 / 0 AT1G14550 367 / 2e-127 Peroxidase superfamily protein (.1) Lus10009900 [exp] 326 / 4e-112 AT1G14550 436 / 1e-154 Peroxidase superfamily protein (.1) Lus10009902 [exp] 318 / 3e-109 AT1G14550 441 / 8e-157 Peroxidase superfamily protein (.1) Lus10024208 [exp] 318 / 3e-109 AT1G14550 442 / 3e-157 Peroxidase superfamily protein (.1) Lus10009898 [exp] 317 / 1e-108 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10024209 [exp] 286 / 3e-96 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10030148 [exp] 278 / 1e-93 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10034207 [exp] 271 / 1e-90 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10025255 [exp] 263 / 3e-87 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G236850 [exp] 317 / 6e-109 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 317 / 6e-109 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 317 / 8e-109 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 317 / 2e-108 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.008G022501 [exp] 315 / 4e-108 AT1G14550 434 / 3e-154 Peroxidase superfamily protein (.1) Potri.008G022232 [exp] 315 / 4e-108 AT1G14550 401 / 6e-141 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 315 / 6e-108 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 315 / 9e-108 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.008G022248 [exp] 313 / 2e-107 AT1G14540 404 / 3e-142 Peroxidase superfamily protein (.1) Potri.001G458900 [exp] 285 / 7e-96 AT1G14540 389 / 3e-136 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10024207 pacid=23175799 polypeptide=Lus10024207 locus=Lus10024207.g ID=Lus10024207.BGIv1.0 annot-version=v1.0 ATGGCTGCGTCGTTAATCCGCCTCCAATTCCACGACTGCTTCGCCCACGGCTGCGACGCTTCGGTCCTACTCGACCAAACCGGAACCTCCACCCAAACCG AGAAAACCGCCATCCCGAATCGAAGATTCGCGAAAACCTTCCAGGTCATCGAGGACGCTAAATCTAGCCTGGAAAGGATGTGCCCTGGCGTCGTCTCTTG CGCCGACATTATCGCGGTCGCCGCTAGAGACGCTTCTGCCGCCGTGGAGGGACCCACCTGGGATGTGAAGCTGGGGAGACGAGATTCGGACGCCGCGTTT CTATCTGAAGCGAATTCGGACATTCCCGGGCCTAAAGATGACCTCCCGACGCTGATTGCTGAGTTCCAGAAAAAGGGGCTTACCGCCAGGGAAATGGTTG TCTTATCGGGAGCTCATACGTTGGGATTCGCGCAGTGCTTTACGTTCCGCGACAGGATCTACGATACTAACGGGACGAATGCGGCGGTGACCAAAATTAT CGATCCCGATTTCGCGAGGAAGAAGAGGAAGGCTTGCCCGGCGCAGGGCGGAGATAGGTTGCTGGCGCCGCTTGATGTGGTGACGCCCAAGTCGTTTGAT AATAACTATTTCAAGACGCTGATGAGGAAGAAGGGGCTTTTGGAGTCTGATCAGGCGCTTTATAGCGGCGGCTCCACCGATACGATTGTTGAGGAGTACA GTAGGGACGGGAACAAGTTTAGTACGGATTTCGCGGCGGCGATGGTGAAGATGGGTGATATCGGAGTGATGACTGGTAATAATGGTCAGATTAGGAAGGT TTGCAGGAGAGCCAATTAA
AA sequence Show only first row Show all	>Lus10024207 pacid=23175799 polypeptide=Lus10024207 locus=Lus10024207.g ID=Lus10024207.BGIv1.0 annot-version=v1.0 MAASLIRLQFHDCFAHGCDASVLLDQTGTSTQTEKTAIPNRRFAKTFQVIEDAKSSLERMCPGVVSCADIIAVAARDASAAVEGPTWDVKLGRRDSDAAF LSEANSDIPGPKDDLPTLIAEFQKKGLTAREMVVLSGAHTLGFAQCFTFRDRIYDTNGTNAAVTKIIDPDFARKKRKACPAQGGDRLLAPLDVVTPKSFD NNYFKTLMRKKGLLESDQALYSGGSTDTIVEEYSRDGNKFSTDFAAAMVKMGDIGVMTGNNGQIRKVCRRAN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14550			Peroxidase superfamily protein...		Lus10024207 [exp]	0	1
					Lus10004280 [exp]	4.1	0.9666
					Lus10019232 [exp]	8.6	0.9594
AT4G14480			Protein kinase superfamily pro...		Lus10041162 [exp]	9.0	0.9582
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	9.7	0.9530
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10027820 [exp]	12.5	0.9486
AT3G07310			Protein of unknown function (D...		Lus10002342 [exp]	13.0	0.9548
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10041951 [exp]	13.3	0.9443
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Lus10023506 [exp]	15.1	0.9016
AT5G55690	MADS		MADS-box transcription factor ...		Lus10007371 [exp]	15.6	0.9208
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10022756 [exp]	21.8	0.9486

Compare expression of checked genes

Lus10024207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.