Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14550 431 / 9e-153 Peroxidase superfamily protein (.1) AT1G14540 429 / 5e-152 Peroxidase superfamily protein (.1) AT5G05340 368 / 9e-128 Peroxidase superfamily protein (.1) AT5G58400 356 / 5e-123 Peroxidase superfamily protein (.1) AT5G58390 319 / 7e-109 Peroxidase superfamily protein (.1) AT4G36430 306 / 1e-103 Peroxidase superfamily protein (.1) AT2G18150 295 / 7e-99 Peroxidase superfamily protein (.1) AT2G18140 292 / 7e-98 Peroxidase superfamily protein (.1) AT5G66390 287 / 8e-96 Peroxidase superfamily protein (.1) AT5G06720 285 / 6e-95 ATPA2 peroxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009902 [exp] 615 / 0 AT1G14550 441 / 8e-157 Peroxidase superfamily protein (.1) Lus10009898 [exp] 594 / 0 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10009900 [exp] 560 / 0 AT1G14550 436 / 1e-154 Peroxidase superfamily protein (.1) Lus10024209 [exp] 417 / 8e-147 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10009899 [exp] 360 / 1e-124 AT1G14550 367 / 2e-127 Peroxidase superfamily protein (.1) Lus10034207 [exp] 335 / 5e-115 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10030148 [exp] 333 / 1e-114 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10030149 [exp] 335 / 4e-114 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10024207 [exp] 329 / 2e-113 AT1G14550 322 / 2e-110 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G236850 [exp] 471 / 7e-169 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 471 / 7e-169 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 468 / 2e-167 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 466 / 1e-166 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 456 / 9e-163 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.008G022232 [exp] 454 / 6e-162 AT1G14550 401 / 6e-141 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 453 / 1e-161 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1) Potri.008G022248 [exp] 453 / 1e-161 AT1G14540 404 / 3e-142 Peroxidase superfamily protein (.1) Potri.008G022501 [exp] 451 / 9e-161 AT1G14550 434 / 3e-154 Peroxidase superfamily protein (.1) Potri.001G458700 [exp] 426 / 9e-151 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10024208 pacid=23175805 polypeptide=Lus10024208 locus=Lus10024208.g ID=Lus10024208.BGIv1.0 annot-version=v1.0 ATGGCCAAATCAGCATTTTGGGCACTGTTACTCATGCTTCTGAGAATTGCAATAAGCCAGTCCCAAGCACAACAACAACTGTCCACAAACTTCTACGCCA ATTCATGTCCCAATGCTCTCTCCACCATAAGGAGATCCATCACCACTGCCATCTCCAGGGAGCGAAGAATGGCCGCGTCTCTACTTCGTCTTCATTTCCA CGACTGCTTTGTCCAAGGATGCGATGCTTCCATATTGCTCGACCAAACACCGACCATCGAATCTGAGAAAACCGCTGCTCCAAATGACAAATCAGCTCGA GGCTACAAAGTCATCGATGCTGCCAAGGCCCAGGTGGAGAGGATATGCCCTGGCGTTGTGTCCTGCGCGGACATTATCGCGGTTGCTGCCAGAGACGCTT CTGCATATGTGGGAGGCCCCTCTTGGAACGTGAAGCTTGGCAGAAGAGATTCGACTTCTGCTTTCCCTGATATGGCTCTTACTGACTTGCCGTTCTTCAA AGAGGACCTTCAATCTCTTATCGATCGGTTCCAGGGGAAAGGGCTTAGCCCTAGAGACATGGTCGCACTCTCTGGGGCTCATACTTTGGGTCAAGCTCAA TGCTTCACCTTTCGCGATAGAATTTATAGCAATGGTACCGACATTGATGCTGGATTCGCGAGCACAAGAAGACGTAGATGCCCTGTGGAAGGGGGAGACG AGACGTTAGCCCCGTTAGATTTGGTGACGCCCAACTCGTTTGATAATAACTACTTCAGGGATCTAGTGCAGAGGAAGGGACTCCTTGTAACCGACCAGGT TCTCTTCAATGGGGGCTCTACTGATAGTATTGTGCTAGAGTACAGCAGGAACCGAGCCAGGTTCAATGGCGATTTCGCCGCTGCCATGATTAGGATGGGT GACATCCAACCATTAACCGGTTCTGCTGGGCAAATCAGGAGGATATGTGGCGCCGTCAACAACTGA
AA sequence Show only first row Show all	>Lus10024208 pacid=23175805 polypeptide=Lus10024208 locus=Lus10024208.g ID=Lus10024208.BGIv1.0 annot-version=v1.0 MAKSAFWALLLMLLRIAISQSQAQQQLSTNFYANSCPNALSTIRRSITTAISRERRMAASLLRLHFHDCFVQGCDASILLDQTPTIESEKTAAPNDKSAR GYKVIDAAKAQVERICPGVVSCADIIAVAARDASAYVGGPSWNVKLGRRDSTSAFPDMALTDLPFFKEDLQSLIDRFQGKGLSPRDMVALSGAHTLGQAQ CFTFRDRIYSNGTDIDAGFASTRRRRCPVEGGDETLAPLDLVTPNSFDNNYFRDLVQRKGLLVTDQVLFNGGSTDSIVLEYSRNRARFNGDFAAAMIRMG DIQPLTGSAGQIRRICGAVNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14550			Peroxidase superfamily protein...		Lus10024208 [exp]	0	1
AT5G57510			unknown protein		Lus10033559 [exp]	1.0	0.9823
AT5G39130			RmlC-like cupins superfamily p...		Lus10000622 [exp]	2.6	0.9770
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021394 [exp]	3.5	0.9811
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038200 [exp]	5.2	0.9814
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008917 [exp]	7.6	0.9822
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10010545 [exp]	13.0	0.9748
AT5G40690			unknown protein		Lus10015261 [exp]	13.7	0.9379
AT5G43440			2-oxoglutarate (2OG) and Fe(II...		Lus10022192 [exp]	16.6	0.9780
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	18.2	0.9779
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003147 [exp]	21.4	0.9659

Compare expression of checked genes

Lus10024208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.