Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14550 425 / 5e-150 Peroxidase superfamily protein (.1) AT1G14540 397 / 4e-139 Peroxidase superfamily protein (.1) AT5G05340 378 / 9e-132 Peroxidase superfamily protein (.1) AT5G58400 366 / 6e-127 Peroxidase superfamily protein (.1) AT5G58390 327 / 2e-111 Peroxidase superfamily protein (.1) AT2G18140 298 / 4e-100 Peroxidase superfamily protein (.1) AT2G18150 297 / 1e-99 Peroxidase superfamily protein (.1) AT4G36430 295 / 1e-98 Peroxidase superfamily protein (.1) AT5G06720 289 / 2e-96 ATPA2 peroxidase 2 (.1) AT5G06730 288 / 1e-95 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009898 [exp] 422 / 7e-149 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10009900 [exp] 421 / 2e-148 AT1G14550 436 / 1e-154 Peroxidase superfamily protein (.1) Lus10009902 [exp] 420 / 3e-148 AT1G14550 441 / 8e-157 Peroxidase superfamily protein (.1) Lus10024208 [exp] 417 / 8e-147 AT1G14550 442 / 3e-157 Peroxidase superfamily protein (.1) Lus10030148 [exp] 360 / 4e-125 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10030149 [exp] 362 / 1e-124 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10034207 [exp] 354 / 3e-122 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10009932 [exp] 355 / 8e-121 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1) Lus10009937 [exp] 332 / 2e-113 AT5G05340 347 / 6e-120 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458700 [exp] 459 / 1e-163 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1) Potri.001G458900 [exp] 454 / 1e-161 AT1G14540 389 / 3e-136 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 436 / 8e-155 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 427 / 4e-151 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 425 / 2e-150 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 422 / 3e-149 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 422 / 3e-149 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.008G022232 [exp] 416 / 1e-146 AT1G14550 401 / 6e-141 Peroxidase superfamily protein (.1) Potri.008G022248 [exp] 415 / 3e-146 AT1G14540 404 / 3e-142 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 414 / 5e-146 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10024209 pacid=23175774 polypeptide=Lus10024209 locus=Lus10024209.g ID=Lus10024209.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCTCCTCCTCCTCCTCCTCCTTTGTCTCTTGTTTTCCTTACATTACTGATCCTCTCATTCTCCCTTCTCCTTTCCACGCCACTCACTCAAG CACAACTCTCATCCAACTTCTACGACTCCACCTGCCCTACCGCTCTCTCCATAATCCGCTCACGTATCCGCACAGCTGTCCAGAGGGAGCGCCGCATGGC AGCCTCCCTCATCAGGCTCCATTTCCACGACTGCTTTGTCCAAGGCTGCGACGCCTCCATCCTCCTCGACGACACTCCTTCCATGACCGGCGAGAAAACC GCCCGCCCAAATGCCAACTCCATCCGTGGCTACTCTGTCATTGACGATGCCAAGTCACAGGTCGAAAACCAGTGCCCTGGCATCGTCTCTTGCGCCGACA TAGTCGCAGTGGCAGCCCGTGACGCATCGGAGGCAGTGGGCGGGCCCACGTGGACGGTCAACCTCGGAAGGAGAGATTCGGCGAGTGCCAGCAGGGACAC CGCGCAGGCCGGTAATCTGCCCGGTTTCAACGACCCGTTGGACCGTATGGTACAACTGTTCGACAACAAAGGGTTGAGCGCACGTGACATGGTGGCCCTG TCTGGGTCCCACACGATCGGACAGGCGAGGTGCGTGACTTTCCGGGGGAGGATTTATAGTAACGGTTCGGATATAGACGCTAACTTTGCGAGCACGAGGA GAAGGCAGTGTCCTAATTCTTCTGATGGAAATGGAGATGGCAATTTGGCGGCTATGGATTTGGTCACTCCCAACTCTTTCGATAATAACTACTTCAGGAA TCTGATGCAAAGGAGGGGGCTTCTCCAATCTGATCAGGTGCTTTTCAGCGGTGGGTCGACTGACGGAATAGTGCAAGAGTATAGTAGGAACCCCAGAGTT TTCACCTCCGATTTCGCGGCTGCTATGGTTCGGATGGGTGATATTGACCCATTGACTGGTTCTCAGGGCCAAGTTCGCAGAGTTTGCAGCGTAGCCAACG CTTCCTGA
AA sequence Show only first row Show all	>Lus10024209 pacid=23175774 polypeptide=Lus10024209 locus=Lus10024209.g ID=Lus10024209.BGIv1.0 annot-version=v1.0 MASPPPPPPPLSLVFLTLLILSFSLLLSTPLTQAQLSSNFYDSTCPTALSIIRSRIRTAVQRERRMAASLIRLHFHDCFVQGCDASILLDDTPSMTGEKT ARPNANSIRGYSVIDDAKSQVENQCPGIVSCADIVAVAARDASEAVGGPTWTVNLGRRDSASASRDTAQAGNLPGFNDPLDRMVQLFDNKGLSARDMVAL SGSHTIGQARCVTFRGRIYSNGSDIDANFASTRRRQCPNSSDGNGDGNLAAMDLVTPNSFDNNYFRNLMQRRGLLQSDQVLFSGGSTDGIVQEYSRNPRV FTSDFAAAMVRMGDIDPLTGSQGQVRRVCSVANAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14550			Peroxidase superfamily protein...		Lus10024209 [exp]	0	1
AT1G14550			Peroxidase superfamily protein...		Lus10024205 [exp]	1.0	0.9973
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	2.0	0.9837
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10036014 [exp]	2.4	0.9869
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10011185 [exp]	3.9	0.9843
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012583 [exp]	5.9	0.9807
AT1G55230			Family of unknown function (DU...		Lus10013749 [exp]	6.3	0.9798
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10020714 [exp]	6.9	0.9709
AT3G05950			RmlC-like cupins superfamily p...		Lus10032017 [exp]	7.4	0.9744
AT1G22810	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009468 [exp]	8.8	0.9590
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Lus10035670 [exp]	9.2	0.9799

Compare expression of checked genes

Lus10024209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.