Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31930 53 / 1e-07 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT2G23460 47 / 2e-05 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 46 / 2e-05 XLG2 extra-large GTP-binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009897 [exp] 456 / 4e-163 AT4G34390 52 / 3e-07 extra-large GTP-binding protein 2 (.1) Lus10042206 [exp] 258 / 1e-83 AT1G31930 54 / 1e-07 extra-large GTP-binding protein 3 (.1.2.3) Lus10008608 [exp] 233 / 6e-75 AT1G31930 50 / 2e-06 extra-large GTP-binding protein 3 (.1.2.3) Lus10010421 [exp] 54 / 1e-07 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 54 / 1e-07 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10023838 [exp] 50 / 1e-06 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 49 / 3e-06 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10019655 [exp] 47 / 1e-05 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G130200 [exp] 221 / 1e-70 AT1G31930 50 / 1e-06 extra-large GTP-binding protein 3 (.1.2.3) Potri.013G157100 [exp] 214 / 8e-68 AT1G31930 51 / 8e-07 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 58 / 5e-09 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 56 / 2e-08 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.009G109400 [exp] 49 / 2e-06 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 49 / 3e-06 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.015G031100 [exp] 48 / 5e-06 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.012G042500 [exp] 48 / 7e-06 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.007G035200 [exp] 47 / 1e-05 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 47 / 1e-05 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024210 pacid=23175747 polypeptide=Lus10024210 locus=Lus10024210.g ID=Lus10024210.BGIv1.0 annot-version=v1.0 ATGGGGGAGAATAAAAGAACGGTAGCGATGGCAAGAATGGAGCTGGAGGATCTCTACTCGGGCCTCCCAGACGACTCAGTCAATCTCACTTTCCAAGACA TGACCCAAATCGATCCGCCCATCAAAATTGGCTCCTTTAACAAAATCCCCTCCCTTGATTTCAAGAAAGGTTTGGAAGCTGGCCAGGTGGCACCCGACCA TCGCCTTATGCAGCTGGGAGGTCCCGCGGTGGGGTCTTCTCCCAACTCGCAACATCACCACAACAACGTGGTGGTGATGATGGATGCTGTGTCGTACGAA CGTAGCAGTCCTCGGAGGAGCGATAGTAACAAGAACAATAATTCAAGCATAATGGCTTCCCCTTACCAGCAAACTCCGGCTTATAACCACCATCATGGTA GAGGGGTGACGCCGCCATACAGTCCTAGTGATTTCAGTCGGAGCAGTGTAGGGACGTCGATGGTTGGGAAAGGAGGTGGAGGGAGGAGACCTGGCATCCC TCATTCTAATATATGTACCATTTGTTCAATTTACATCTATATCTTCAAGAATCGCTGTCTCGTGTGCGGAAGAGTGTACTGCAGGAATTGCTTCAACATG GGGATGGGAGATATGACTGAGGGAAGAAAATGCGTCGAATGTGTTGGAAGACGATTTAGTGCAAGGTACATAAGGAAAGCGGGAGCGATAGGCTGTTATT CTCGGTATCCGTTGGTGGTGAAGCAAGCAGAGTTGAAGTGGGCGGAGAAAGGTCCGAGGAGGAGCGGCGAGCGAGCCTACGGTAGCCAACATGGTAACTT CAACATGAAATCGGGATCTTCGACGCCGATGGCTAGTCCATTCACTCCGTCAAGGACCCCGCCGTCTTATCTGATGGGCTCCCCTTATTCCCCATACTCC TCTTCTCATCACCACCTACCACTCTAA
AA sequence Show only first row Show all	>Lus10024210 pacid=23175747 polypeptide=Lus10024210 locus=Lus10024210.g ID=Lus10024210.BGIv1.0 annot-version=v1.0 MGENKRTVAMARMELEDLYSGLPDDSVNLTFQDMTQIDPPIKIGSFNKIPSLDFKKGLEAGQVAPDHRLMQLGGPAVGSSPNSQHHHNNVVVMMDAVSYE RSSPRRSDSNKNNNSSIMASPYQQTPAYNHHHGRGVTPPYSPSDFSRSSVGTSMVGKGGGGRRPGIPHSNICTICSIYIYIFKNRCLVCGRVYCRNCFNM GMGDMTEGRKCVECVGRRFSARYIRKAGAIGCYSRYPLVVKQAELKWAEKGPRRSGERAYGSQHGNFNMKSGSSTPMASPFTPSRTPPSYLMGSPYSPYS SSHHHLPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10024210 [exp]	0	1
					Lus10014099 [exp]	1.0	1.0000
					Lus10005838 [exp]	5.5	0.8390
AT1G50750			Plant mobile domain protein fa...		Lus10036654 [exp]	6.3	0.6063
					Lus10010697 [exp]	7.5	0.7821
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	8.7	0.7821
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10037728 [exp]	9.4	0.7796
AT5G20610			unknown protein		Lus10025003 [exp]	9.7	0.7821
					Lus10008327 [exp]	10.7	0.7821
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	11.5	0.7821
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10026300 [exp]	13.1	0.7636

Compare expression of checked genes

Lus10024210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.