Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26665 258 / 2e-88 Mediator complex, subunit Med10 (.1.2) AT5G41910 238 / 8e-81 MED10A Mediator complex, subunit Med10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009896 [exp] 306 / 3e-99 AT2G24370 632 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G083801 [exp] 287 / 3e-100 AT1G26665 265 / 2e-91 Mediator complex, subunit Med10 (.1.2) Potri.003G146900 [exp] 285 / 1e-99 AT1G26665 274 / 5e-95 Mediator complex, subunit Med10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09748 [flax] [poplar] Med10 Transcription factor subunit Med10 of Mediator complex
Representative CDS sequence Show only first row Show all	>Lus10024211 pacid=23175730 polypeptide=Lus10024211 locus=Lus10024211.g ID=Lus10024211.BGIv1.0 annot-version=v1.0 ATGGATACTTCACAGAACATTGTCGGAGGGAACGGTGGCAATGGCGTATTGTCTGCCCAGGAAAATGATACTACTAACTCTGCAACAGCACCAGCCAATG ATCCAAAGGAAAATCTGAACCAGGTTATTAACTCAATTCAGAAGATTCTTGGCTACATCCATCAGCTTTACCTCACTGTCTCCTCGTTCAATGCTGCCTC TCAGGCTCCTCTCCTGCAGCGCCTCAATTTACTCATGACAGAGCTAGACAATATGGAGAAACTCTCTGAGAAGTGCAATATTCAAGTTCCCATGGAGGTT CTTAGTTTAATTGATGATGGAAAAAATCCAGATGAATTCACACGGGATGTCATAAACAGTTGCATTGCGAAAAATCAAGTTACCAAGGGGAAAACTGATG CCTTTAAGGCTCTACGTAAAAATCTCTTGGACGAACTTGAGCAGGCTTTTCCCGATGAAGTTGAATCATACAGGGAAATACGTGCAATTTCTGCTGCTGA AACAAAACGCCTTGCTCAAGCACAAAGTTCGTTGCCAAATGGAGACATGAAGGTGAAACCTGAGGTTTAA
AA sequence Show only first row Show all	>Lus10024211 pacid=23175730 polypeptide=Lus10024211 locus=Lus10024211.g ID=Lus10024211.BGIv1.0 annot-version=v1.0 MDTSQNIVGGNGGNGVLSAQENDTTNSATAPANDPKENLNQVINSIQKILGYIHQLYLTVSSFNAASQAPLLQRLNLLMTELDNMEKLSEKCNIQVPMEV LSLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKALRKNLLDELEQAFPDEVESYREIRAISAAETKRLAQAQSSLPNGDMKVKPEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26665			Mediator complex, subunit Med1...		Lus10024211 [exp]	0	1
AT4G33740			unknown protein		Lus10020507 [exp]	5.6	0.9214
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	8.2	0.9122
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10023242 [exp]	9.0	0.9019
AT1G66540			Cytochrome P450 superfamily pr...		Lus10032856 [exp]	9.5	0.9034
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	13.2	0.9033
AT1G03280			Transcription factor TFIIE, al...		Lus10011554 [exp]	14.1	0.8926
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	16.7	0.9066
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	17.8	0.9065
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008824 [exp]	17.9	0.9019
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	18.3	0.9039

Compare expression of checked genes

Lus10024211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.