Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24370 715 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 696 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 661 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 657 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT5G35380 653 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 541 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 539 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 535 / 0 protein kinase family protein (.1) AT3G20200 501 / 8e-167 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 442 / 1e-144 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009896 [exp] 1075 / 0 AT2G24370 632 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10042205 [exp] 800 / 0 AT1G16760 691 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 709 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 617 / 0 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 606 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 601 / 0 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 590 / 0 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 576 / 0 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 549 / 0 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078500 [exp] 716 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 701 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G002400 [exp] 609 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 550 / 0 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 541 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G001700 [exp] 526 / 6e-176 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 510 / 4e-170 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.001G198300 [exp] 505 / 2e-167 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G233000 [exp] 381 / 3e-120 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G147000 [exp] 362 / 6e-114 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10024212 pacid=23175740 polypeptide=Lus10024212 locus=Lus10024212.g ID=Lus10024212.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCCACCATAAAAAAGAATAACAATTCCCCACCAGGCGAGCCACAAGTTGTGGTGGTGGCCGTCGACAAGGACAAAGGTAGCCAATTCGCCC TCAAATGGACCATCGAGAACTTGGTCTCCAAAGGAGGTTCCATCATTCTTCTTCATGTCAGGCAAAAACCTTCCCCACCCTCATCCGCCTTTCCCGCCTA CCCATTCGGAGTTGGAGGTGGGTCCCATCATCCGAATTCCGATCCAAAAGACGACAATGGTGGCGGCGGTGGTGGTGCAAAGAAACAACAGCTATATGAC CCCAGCCTAGCCAAGGAGCTCTTCCTTCCCTTCCGCTGCTTCTGCTCCCGAAAAGAGATAAGAACAATTGAAGTTTTGTTGGAGGACACGGAAATTCCAA AGGCAATCACCAATTACTGCCTCACTAATGTCGTGGACGTTCTTGTACTTGGTACCCCCTCCCGCGGAGGCCTCGTCAGAAGGTTCAAGCTGACAGATGT GCCGAGTACAGTTCTGAAAGGAATACCAGATTTCTGCAGCGTATATGTGATTGGGAAAGGCAAGATTTCCACTCTACGAACCGCCACCGCTCCTGCTCCG CCTAGATCTTCCGCCCTTGTCAGCCCACCCACCAACAATGTCGACGTCGATGACAAGAAGGGATCATCCAGCGAAACTTACCATAACGATTATTCGGACG ATGACGGCTCCTACAGGTCATCGGTGAGCAGAGGGAGACCTTCGAGCCTGACGGATACGGACATTTCGTTTATAAGCAGCAATGGAGGCGGCGGAGGAAG GATGAGCGTGGAGCGTATCATGTTTCCTTTTTACGATAACAACGATTTCGGTACCAACCTTCCCAGGCTCTCTGGAGCTTCAAGTTCCGACGTTATAAGC GTAGCGTCATCCTACGGGGGAGGAACACCTGATTTCGGTGGATACAGCGATTTCTCAACCACCTCTGACATTGACAGCGTCAGGCTTTCTTCTGCTTCCC GGGGAATGGATGATGTTGAGTCGGAGGTAAGGAGGCTCAAATTGGAGCTCAAGCAAACCATGGAGATGTACAACAACGCTTGCAAAGAGGCCCTCACTGC AAAATCCAAGGCAAAGGAGCTGCAGAGATGGAAAATGGAGAAGCAGCAGAAGAAAGAGATGGCGAAGACGGTGGAAGAGGCAGCATTAGCCGCCGTCGAG CAGGAAAAAGCGAAACGCCAGGCGGCCATGGAAGCAGCAGAATCAGCTCAGAAGCTTGCAGAACGAGAAACCTTGAAGAGGAAAAACGCCGAGATGAAAT TGATGATCGATTCCGAAGGAAGAAAACACACAGAGTCCATTGCCCACAACGAACTCCGCTGCCGCCAATACACAATCGAAGAGATCATTGACGCCACCAA CGATTTCACCGCCTCTCTCAAAATCGGAGAAGGAGGGTACGGCCCAGTATACCGCTGCTACCTCGACCACACTCCCGTCGCAATCAAAGCTCTCCACCCG GACGCCGCACAAGGGAGGTCTCAATTCCAGCAAGAGGTCGATATTCTGTCTCGAATCCGCCATCCAAACATGGTTTTGTTAATCGGAGCATGTCCAGAAT ACGGCTGCTTAGTCTACGAGTATATGGCCAACGGCAGTTTGGATGACCGCCTCCTCCGGCGAGGGAATACTCCGGCGTTGTCGTGGCAGTTGAGATTCAG AATCGCGGCGGAGATCGCTACCGGACTTCATTTCCTCCACCAGACGAAACCGGAGCCGCTGGTCCATCGAGATCTGAAGCCGGGGAATATTTTGTTAGAT CGGAATTTTGTGAGCAAGATCAGCGACGTCGGATTGGCGAGGCTGGTTCCGCCGTCGGTGGCGAATAGCATCACGCAGTACCGGATGACGCAGACGGCGG GGACATTTTGCTACATTGATCCGGAGTATCAGCAGACTGGGATGTTGGGGACCAAATCGGACATTTATTCGCTAGGGATTATCTTCTTGCAGTTGTTGAC GGCTAAGCCGCCGATGGGGCTGACTCACCACGTGCAGCGGGCGATCGAGAAGGGGAATTTTGCGGAGATGTTGGATCAGGATGTGCCGGATTGGCCGGTG GAGGAGGCGCTGAAGCTGGCGAAATTGGGGATCCAGTGTGCGGAATTGAGGAGGAAAGATAGGCCAGATCTTAAGGAGGTTCTTCTGCCGGAGCTTAGCA GGTTGAGAGCGCTTGCGGAGGAGAGAATGGCTAGCTTGTACTTCGCCGGCGGGGGCGCTGCCGGGGCGCAGTTTCAGAGCCACGTGAGTGAGGAGGTTAT GTCTGGGTACGATAGCTCCAGGAGCCGGGCTTCTAGCACGTCGTCGTTTTATGGGAGACAAAGCTGA
AA sequence Show only first row Show all	>Lus10024212 pacid=23175740 polypeptide=Lus10024212 locus=Lus10024212.g ID=Lus10024212.BGIv1.0 annot-version=v1.0 MAAATIKKNNNSPPGEPQVVVVAVDKDKGSQFALKWTIENLVSKGGSIILLHVRQKPSPPSSAFPAYPFGVGGGSHHPNSDPKDDNGGGGGGAKKQQLYD PSLAKELFLPFRCFCSRKEIRTIEVLLEDTEIPKAITNYCLTNVVDVLVLGTPSRGGLVRRFKLTDVPSTVLKGIPDFCSVYVIGKGKISTLRTATAPAP PRSSALVSPPTNNVDVDDKKGSSSETYHNDYSDDDGSYRSSVSRGRPSSLTDTDISFISSNGGGGGRMSVERIMFPFYDNNDFGTNLPRLSGASSSDVIS VASSYGGGTPDFGGYSDFSTTSDIDSVRLSSASRGMDDVESEVRRLKLELKQTMEMYNNACKEALTAKSKAKELQRWKMEKQQKKEMAKTVEEAALAAVE QEKAKRQAAMEAAESAQKLAERETLKRKNAEMKLMIDSEGRKHTESIAHNELRCRQYTIEEIIDATNDFTASLKIGEGGYGPVYRCYLDHTPVAIKALHP DAAQGRSQFQQEVDILSRIRHPNMVLLIGACPEYGCLVYEYMANGSLDDRLLRRGNTPALSWQLRFRIAAEIATGLHFLHQTKPEPLVHRDLKPGNILLD RNFVSKISDVGLARLVPPSVANSITQYRMTQTAGTFCYIDPEYQQTGMLGTKSDIYSLGIIFLQLLTAKPPMGLTHHVQRAIEKGNFAEMLDQDVPDWPV EEALKLAKLGIQCAELRRKDRPDLKEVLLPELSRLRALAEERMASLYFAGGGAAGAQFQSHVSEEVMSGYDSSRSRASSTSSFYGRQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24370			Protein kinase protein with ad...		Lus10024212 [exp]	0	1
					Lus10012576 [exp]	16.8	0.6584
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Lus10019641 [exp]	44.5	0.6108
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041691 [exp]	53.7	0.5653
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10033859 [exp]	63.7	0.5879
					Lus10036643 [exp]	66.2	0.5577
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010665 [exp]	108.8	0.5538
AT4G18400			unknown protein		Lus10023291 [exp]	115.0	0.5582
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10008057 [exp]	119.0	0.5183
AT3G11690			unknown protein		Lus10029349 [exp]	159.4	0.5345
AT4G23210		HIG1, CRK13	cysteine-rich RLK (RECEPTOR-li...		Lus10003735 [exp]	174.6	0.5312

Compare expression of checked genes

Lus10024212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.