Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74680 454 / 1e-157 Exostosin family protein (.1) AT3G45400 424 / 5e-146 exostosin family protein (.1) AT3G03650 402 / 9e-137 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT1G67410 298 / 4e-97 Exostosin family protein (.1) AT2G35100 229 / 2e-70 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 214 / 2e-64 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT5G16890 200 / 1e-58 Exostosin family protein (.1) AT1G34270 199 / 2e-58 Exostosin family protein (.1) AT5G25820 85 / 2e-17 Exostosin family protein (.1) AT3G07620 79 / 1e-15 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002060 [exp] 790 / 0 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10003870 [exp] 446 / 3e-154 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10020308 [exp] 439 / 4e-151 AT3G45400 622 / 0.0 exostosin family protein (.1) Lus10005684 [exp] 441 / 1e-150 AT3G45400 619 / 0.0 exostosin family protein (.1) Lus10013627 [exp] 405 / 2e-140 AT3G45400 524 / 0.0 exostosin family protein (.1) Lus10015791 [exp] 291 / 4e-94 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 289 / 2e-93 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10038355 [exp] 227 / 2e-69 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10036219 [exp] 229 / 6e-69 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G210000 [exp] 511 / 6e-180 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.013G067400 [exp] 452 / 1e-156 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.019G044600 [exp] 448 / 9e-155 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.008G034500 [exp] 278 / 2e-89 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.012G124600 [exp] 242 / 8e-75 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.015G124800 [exp] 233 / 2e-71 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.013G116200 [exp] 212 / 3e-63 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 210 / 8e-63 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 210 / 2e-62 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 109 / 3e-29 AT3G45400 145 / 5e-43 exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10024214 pacid=23175781 polypeptide=Lus10024214 locus=Lus10024214.g ID=Lus10024214.BGIv1.0 annot-version=v1.0 ATGTCTGAGAAAACCAGGACTCCATCAAGGCTTCTTTTCTACCTAATCACCCTTTCTTTGTTCCTCTTGATACTTTCTTCTTTGTCCCTTCGTCAGTTTG GCAATGTCTCGTTGCTACCCGGATCCGTTTTCGGATTGATCCTTGTGAATGAAACCTCGATTTATTCGAATTCCGATTTTCAAACTAGCTCAAACAATAT AACCCCCTTCTTTTCACCTCTTGCCTCAATAACACAGTCCTCTAATGAAGGAAGACCTTGTTCAACTTCTGGACGCTTGACTTGTCACCCTAACAATGCT GTTCTAAAGCATAGTATGGAGTATTGGCTGACGCTAGATCTGCTAGCATCTAACGTGCCAAGTATTGTCAGATCTTGTACTGCAATTAGAGTTGATAATT CTAGTGAAGCAGATATAATCTTTGTGCCATTTTTCTCGTCTCTGAGTTACAATCGGCATTCCAAGCCTTTGGGAAGACAGAAAGTTGTGCTCAACAAAAT TTTGCAAGACAAATTGGTGAAGTATTTGATGGATCAGGATTTGTGGAAGAGATATGGTGGGAAAGATCATTTGATTTTCGCACATCATCCTAATAGCATG GCATATTCGAGGAAGAAGTTGGCTTCTGCCATGTTTGTGCTTGCTGATTTTGGGAGGTATCCTGAAAAAGTTGCGAATATAAGGAAGGACGTAATAGCTC CTTACAAACATGTCGTCCGTAGCATTCCAAATGCTAAATCAGCTCAGTTTGATCAGCGCCCTACACTAGCTTATTTCAAAGGAGCTATTTACAGAAAGGA TGGAGGAGCTACCCGCCAGGAGCTGTATTACCTGCTGAAAGATGAAAAAGATGTAGACTTTACATTTGGATCCTACGGGAAGGATGGGGTCAAGAAGGCC GCTGAAGGAATGGCTGCATCCAAATTCTGCTTCCATATAGCCGGCGATACACCTTCCTCTAATCGGCTATTCGACATCATCGCCACTCACTGCATCCCTG TCATAATAAGTGATACGATTGAGCTACCCTTTGAAGATGAGCTGGACTACTCGGACTTCAGTGTGTTTGTTCATGCATCTGATTCTGTCAAACCAGGGTA CCTGCTGAAGCTTCTGCGTGGAATCAAACGAGACGTGTGGACCGAGATGTGGCTGAAATTACAAGAAATAACTTTTCACTTTGAGTATCGTTATCCTTCC CAGCCTGGTGATGCTGTCGATATGATCTGGAATGCAGTATCGCGGAAGCTGGATTCGGTTCGGTTACAGGCTAACCGGAAAAACAGATACCACCGTGCTT ACCAGAACCAGATTGAACAGACAGTTTAG
AA sequence Show only first row Show all	>Lus10024214 pacid=23175781 polypeptide=Lus10024214 locus=Lus10024214.g ID=Lus10024214.BGIv1.0 annot-version=v1.0 MSEKTRTPSRLLFYLITLSLFLLILSSLSLRQFGNVSLLPGSVFGLILVNETSIYSNSDFQTSSNNITPFFSPLASITQSSNEGRPCSTSGRLTCHPNNA VLKHSMEYWLTLDLLASNVPSIVRSCTAIRVDNSSEADIIFVPFFSSLSYNRHSKPLGRQKVVLNKILQDKLVKYLMDQDLWKRYGGKDHLIFAHHPNSM AYSRKKLASAMFVLADFGRYPEKVANIRKDVIAPYKHVVRSIPNAKSAQFDQRPTLAYFKGAIYRKDGGATRQELYYLLKDEKDVDFTFGSYGKDGVKKA AEGMAASKFCFHIAGDTPSSNRLFDIIATHCIPVIISDTIELPFEDELDYSDFSVFVHASDSVKPGYLLKLLRGIKRDVWTEMWLKLQEITFHFEYRYPS QPGDAVDMIWNAVSRKLDSVRLQANRKNRYHRAYQNQIEQTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74680			Exostosin family protein (.1)		Lus10024214 [exp]	0	1
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10014507 [exp]	2.0	0.8267
AT2G31810			ACT domain-containing small su...		Lus10027061 [exp]	4.2	0.7726
AT2G31810			ACT domain-containing small su...		Lus10025595 [exp]	15.2	0.7414
AT3G44160			Outer membrane OMP85 family pr...		Lus10013360 [exp]	15.5	0.7917
AT5G26910			unknown protein		Lus10020689 [exp]	18.0	0.7521
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10039077 [exp]	25.5	0.6573
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10010748 [exp]	27.2	0.7523
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10019725 [exp]	33.2	0.6346
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10010336 [exp]	34.4	0.7297
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10007951 [exp]	49.5	0.6861

Compare expression of checked genes

Lus10024214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.