Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74640 457 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 42 / 0.0006 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002055 [exp] 639 / 0 AT1G74640 502 / 3e-179 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G115100 [exp] 481 / 4e-171 AT1G74640 479 / 2e-170 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024219 pacid=23175743 polypeptide=Lus10024219 locus=Lus10024219.g ID=Lus10024219.BGIv1.0 annot-version=v1.0 ATGGCCGCAGCTTCTTCAGCCTTGCTCATCAGCCCCTTCTCCACTTCCTTCACGGCCGTTTCTCGCACGAGGAGTTACAAGCCATTTCTCTCCTTCCAAC GACCCATTTCACTTCAAGCTTCTTCCACTTCTGCTGCTTACTCGTCTTCACCAATTGTTGCCGATAAGCCCTCCACCCCCTTCAAGTCAAATAGTTGGAG ATGGAAGTTCGAGGATAAATCTGTCAGCATTTATTATGAAGAACACTTGAAGGATAGCTCTGATTCACTTAAAGATATTCTCATGATACCAACAATTTCT GATGTGAGCATTGTGGAGGAATGGAGATCAGCTGCTATTGACATGGTCCAGCGTGTTGGTGGAATCAATTGGCGGGCTACTATTGTTGATTGGCCCGGTT TGGGTTACTCGGATCGGCCAAAGATGGACTACAATGCTGATATGATGGAAAATTTCTTGGTTGATTTCATAAATGCACCTGATAGCCCCCTTAAGAACTC AGTAAATGATTTGGTGGTCGTTGGTGGAGGACATGCTGCCACAATATTACTCCGTGCTGCAAAGAAGGGGTTGGTGAAGCCGGCTGCTATTGCAGCTGTT GCACCAACCTGGGCTGGTCCACTGCCCATTGTGTTTGGTCGGGACTCAACCATGGAATCAAGGTACGGTCTACTTAGGGGGACATTGAGGGCACCTGGAG TGGGTTGGATGATGTATAACATGCTGGTCAGCAATGAGAAGTCTATTCAGTCACAGTACAAATCCCATGTCTATGCCGATCCGGGCAACGTGACTGAAGA CATTGTTGAGAGCCGATATGCTCTGACGAAAAAAAAGGGTGCACGTTACGCTCCTGCTGCTTTTTTGACTGGTTTGCTTGATCCGGTTAAATCCAGAGAG GAGTTCCTTGATTTGTTTGCAAGTTTAGATGGGATTACCCCGATCCTCGTTGTGTCATCCAAAGGATCTCCCAAGAGATCAAAAGCAGAGATGGAAGCTC TCAGAGGAGCAAGCGGGGTGACCAAGTACGTAGAGGTTCCAGGTGCCCTTTTGCCACATGAAGAATATCCTAAGATGGTAGCAGAAGAACTGTTCCAGTT TCTGCAAAAGTAA
AA sequence Show only first row Show all	>Lus10024219 pacid=23175743 polypeptide=Lus10024219 locus=Lus10024219.g ID=Lus10024219.BGIv1.0 annot-version=v1.0 MAAASSALLISPFSTSFTAVSRTRSYKPFLSFQRPISLQASSTSAAYSSSPIVADKPSTPFKSNSWRWKFEDKSVSIYYEEHLKDSSDSLKDILMIPTIS DVSIVEEWRSAAIDMVQRVGGINWRATIVDWPGLGYSDRPKMDYNADMMENFLVDFINAPDSPLKNSVNDLVVVGGGHAATILLRAAKKGLVKPAAIAAV APTWAGPLPIVFGRDSTMESRYGLLRGTLRAPGVGWMMYNMLVSNEKSIQSQYKSHVYADPGNVTEDIVESRYALTKKKGARYAPAAFLTGLLDPVKSRE EFLDLFASLDGITPILVVSSKGSPKRSKAEMEALRGASGVTKYVEVPGALLPHEEYPKMVAEELFQFLQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	0	1
AT2G46100			Nuclear transport factor 2 (NT...		Lus10007918 [exp]	2.0	0.9366
AT5G19940			Plastid-lipid associated prote...		Lus10026221 [exp]	2.6	0.9438
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10023734 [exp]	3.2	0.9328
AT5G61820			unknown protein		Lus10004249 [exp]	4.2	0.9299
AT5G03880			Thioredoxin family protein (.1...		Lus10021357 [exp]	4.9	0.9331
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	6.0	0.9330
AT1G54520			unknown protein		Lus10015939 [exp]	7.0	0.9289
AT2G44760			Domain of unknown function (DU...		Lus10029792 [exp]	7.6	0.9061
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10022477 [exp]	10.0	0.9250
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10028633 [exp]	11.4	0.9180

Compare expression of checked genes

Lus10024219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.