Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74600 924 / 0 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT4G13650 509 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 440 / 1e-140 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 440 / 4e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 427 / 4e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G09950 424 / 1e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 420 / 2e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 419 / 3e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 406 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 404 / 3e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002054 [exp] 1710 / 0 AT1G74600 930 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 483 / 3e-155 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 442 / 6e-141 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017082 [exp] 442 / 1e-140 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004081 [exp] 437 / 7e-139 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 430 / 6e-138 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 427 / 6e-137 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 432 / 3e-136 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 425 / 5e-134 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058900 [exp] 498 / 6e-161 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 478 / 9e-154 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 457 / 2e-146 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 451 / 5e-144 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G068600 [exp] 448 / 5e-142 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G187800 [exp] 444 / 7e-141 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G129100 [exp] 442 / 3e-139 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 430 / 4e-137 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 433 / 6e-137 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 429 / 1e-136 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024220 pacid=23175768 polypeptide=Lus10024220 locus=Lus10024220.g ID=Lus10024220.BGIv1.0 annot-version=v1.0 ATGAATGTCCAGCTGAACAGAAATCTGTTTAAGCTGAAAATCGTCCCACAGCTCCTCGCACGATTCAAATCTTCATTGGCAGCCAAGGAAAATGCACCCT GGGGTACTACCAATCCGGCTGTTGACTTGTTTCACGAGTATGCGAAATCCCCTCATTTGACCCTCCAAAACACACGAATCTTGCATGCCCATTTGCTTGA AACTGGCTTGTTACCTTCCGATCTGTTTGTCGCCAACTCTTTGCTTCGTTGGTATGGTAAATTTGATGCCATGGTCGATGCACTGAAGCTGTTCGACACA ATTCCCCAGCCAAATCTGATTTCTTGGAACACCATGGTCTCAAGCTGTAATGGGAACTTTCGGTTCGAAGATTCATGGGGGATCTTTTGTAGGATGCACA TTTCGGGGTTTCAGCCCGATGAGATAACTTATGGGAGTGTTCTTTCTGCTTGTGGTGGCCTTCTTGCTCCTAGTTTAGGCGAGCAGGTATACTCGTTCTC CATTAAGAATGGTTTTTGCTCAAGTGGGTATGTTTGTACAGGAATGATAGATTTATTTGCCAAAAATGGTCGGTTAGAGGATGCTTTCAATGTGTTCGGT TCAGTTAGTTGTGCAAATGTGGTTTGCTGGAATTCGATCATCTCCGGTGCTGTTAAAAATTACCAGAATTTGAGAGCCTTGCAACTTTTTCAGCAAATGG GCCGCGAGGGTTTGGTGCCAAATAGTTTCACATTTTCTAGTGTTTTGACAGCCTGTGTGGCTCTTGCAGACATTCATATTGGAAAAGGAGTTCACAGCTT GGTGATAAAGTGCGGTTCCAGGGATGTATTTGTTGGAACTGTCATAATTGATTTATACTCCAAATGCGGTGATATGGAAGAAGCTTTGAAGGAATTTAAT CGGATGCCTGTTCGCAATGTAGTTTCTTGGACGGCCATTATATCTGGTTTTGTGAAAAGAGATGATTCACTTTCTGCCCTCAAAATATTCATGCAAATGA GGCAAGTGAATGAACGGATAAACAATTTTACTATTACTAGTGTTCTTACTGCATGTGCCAAGCCTGACATGACTAAAGAGGCAATCCAACTCCATTGTTG GATTGTCAAAGCTGGATATTATCTGGACGGATCTGTCAGTGCCGCTCTAATTAGCATGTATTCGAAATTTGGTGCTTTAGATCGGTCAGAGATGTTGTTT ACAGAAATGAACAAAGTACAGAACTCAGGAATATGGGCTGTTATGATATCTTCTCTTTCTCAGAGTCAGAATTCTCAGAGGGCTGTTGAGATGTTTTGGA GAATGTTACAGGAGGATCAAAGACCTGATAATTTTTGTTATTCTAGTGTCTTGAGTGTTATAAACTGTTTGCATTTAGGGAGTCAAATCCACTGCCATGC ATATAAATTTGGATTTGTGTATGATCTTTCTGTTGGAAGTTCTATTTTCACGATGTACTCAAAGAACGGTAGCATAGAGGACTCTTACAAAGTGTTTCAG CAGATCCCTGTCCGAGACAATGTTTCTTGGACTTCTATGATTGCAGGATTTGCAGAGCATGACTATGGGGAGTATGCTCTTTCACTTTTGATGGACATGC TGTCAGGAGGAAACAAGCCTGACCAGAGCACATTAACAGCTGCTCTTACTGCATGCTCAGTTCTCCCATCCGTACATAAGGGGAAAGAAATTCACGGATA TGCTTTCCGAGCTGGATTAGCCTCGAAGGAACTTATCAGTAGTGCACTTGTTTGTATGTATTCAAAATGTGGAGCTCTGGCATTTGCTACAAAAGTGTTT GACTTGCTTCCTCAGAAGGATCAAGTCTCATGCTCTTCCTTGGTTTCAGGGTACGCTAAAAACGACCTTCTTGAAGAGGCAGTGGTACTATTTCAGAAAA TGCTCGTGTCTAATTTCACGGTTGACTCCTTCACAATTTCATCTACTCTAGGAGCTATTGCAGGTTTAAATAGATTGGAGCTAGGAATGCAAGTTCATAC CCTTGTTACAAAACTGGGCCTAGATTCTGAACTTTCTGTTGGGAGTTCACTGGTTACGATGTACTCTCAGTGTGGAAACATTGCAGATTGCGCTAAATCG TTCGATCAGATTGTTGACCCTGACCATATAAGTTGGACGTCACTGATAGCAAGCTATGCTGCACATGGGAAAGGTAAAGAGGCTTTAGAAGTCTATGAAC ATATGATAGGAAAGGGAATTAGACCCGATGCAGTGACTTTCGTCGAGATTCTCTCTGCTTGCAGCCATGCTAACTTGGTTGAGAAAGGTGACTTCTACTT CTCTTCGATGACTAGAGACTTTGGAATTGAGCCTGATAATCGTCACAATGCCTGCATGGTCGATCTTCTTGGTCGTTCGGGGAAATTGAAAGAGGCTGAA AGTTTCATCAACAGCATGCCTATTGACCCAGATTCTCTTGTGTGGACAACGCTGCTTGCTGCTTGCAAGTTGCATGGGGATATTGATCTTGGAAAGAAAG CAGCAGAGAAAGCTATGGAACTGGCGCCGGGCCGTTCAGGATCTTATATCTCATTGTCCAACATCTTTGCGGATGTAGGAAAATGGAAAGAAGCTGTAGA TATTAGAAGAAGAATGAGTGTAATTGGAGTAAATAAGGAACCTGGCTGGAGTTTCACTTGA
AA sequence Show only first row Show all	>Lus10024220 pacid=23175768 polypeptide=Lus10024220 locus=Lus10024220.g ID=Lus10024220.BGIv1.0 annot-version=v1.0 MNVQLNRNLFKLKIVPQLLARFKSSLAAKENAPWGTTNPAVDLFHEYAKSPHLTLQNTRILHAHLLETGLLPSDLFVANSLLRWYGKFDAMVDALKLFDT IPQPNLISWNTMVSSCNGNFRFEDSWGIFCRMHISGFQPDEITYGSVLSACGGLLAPSLGEQVYSFSIKNGFCSSGYVCTGMIDLFAKNGRLEDAFNVFG SVSCANVVCWNSIISGAVKNYQNLRALQLFQQMGREGLVPNSFTFSSVLTACVALADIHIGKGVHSLVIKCGSRDVFVGTVIIDLYSKCGDMEEALKEFN RMPVRNVVSWTAIISGFVKRDDSLSALKIFMQMRQVNERINNFTITSVLTACAKPDMTKEAIQLHCWIVKAGYYLDGSVSAALISMYSKFGALDRSEMLF TEMNKVQNSGIWAVMISSLSQSQNSQRAVEMFWRMLQEDQRPDNFCYSSVLSVINCLHLGSQIHCHAYKFGFVYDLSVGSSIFTMYSKNGSIEDSYKVFQ QIPVRDNVSWTSMIAGFAEHDYGEYALSLLMDMLSGGNKPDQSTLTAALTACSVLPSVHKGKEIHGYAFRAGLASKELISSALVCMYSKCGALAFATKVF DLLPQKDQVSCSSLVSGYAKNDLLEEAVVLFQKMLVSNFTVDSFTISSTLGAIAGLNRLELGMQVHTLVTKLGLDSELSVGSSLVTMYSQCGNIADCAKS FDQIVDPDHISWTSLIASYAAHGKGKEALEVYEHMIGKGIRPDAVTFVEILSACSHANLVEKGDFYFSSMTRDFGIEPDNRHNACMVDLLGRSGKLKEAE SFINSMPIDPDSLVWTTLLAACKLHGDIDLGKKAAEKAMELAPGRSGSYISLSNIFADVGKWKEAVDIRRRMSVIGVNKEPGWSFT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74600		OTP87	organelle transcript processin...		Lus10024220 [exp]	0	1
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10004081 [exp]	1.7	0.7757
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10028521 [exp]	12.1	0.7654
AT4G38120			ARM repeat superfamily protein...		Lus10033267 [exp]	15.7	0.7244
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	16.8	0.7281
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	23.0	0.7502
AT1G60400			F-box/RNI-like superfamily pro...		Lus10009224 [exp]	24.2	0.7459
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10020096 [exp]	25.1	0.7223
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10000306 [exp]	31.0	0.6670
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	38.2	0.7207
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10027267 [exp]	38.2	0.6629

Compare expression of checked genes

Lus10024220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.