Plant FIBer expression Database

Lus10024221 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G34860 165 / 4e-52 EDA3 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023593
[exp]
196 / 6e-64 AT2G34860 124 / 1e-35 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G009800
[exp]
187 / 6e-61 AT2G34860 201 / 6e-66 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10024221 pacid=23175751 polypeptide=Lus10024221 locus=Lus10024221.g ID=Lus10024221.BGIv1.0 annot-version=v1.0
ATGAAAGAGGCTTCAAGGACCAGCAGGACGGTGAACTATGCATACAGCGGTGTGTTAGCTGAAAGGTCACAGTTCTCAGTTCCCTTATCATTAGCAATCG
ACTCAAAGTCGGTAGGGTTTCATGTTAGAGCGACACTGGAGAATGGTGGCAGCACTACTGGATGTTCGGACTCTTCAGACTCTTCAAGTCCTACAAAGGA
ATCTCAAACATCAACATCAAGACGTAGGTGTCTTGCGTGCATATGTTCAACTATGGCTTTGATTGGTAATTCATCAATTTCTCCTTCTATTCCAAGAGCA
AATGCGTCAGATGGAAAACCAAACCCTGGCTGCCGTAATTGTGGGGGCTCCGGTGCTGTTCTTTGTGACATGTGTGGTGGAACTGGAAAATGGAAAGCCC
TCAACAGGAAACGTGCTAAAGATGTCTATGAGTTCACTGAATGTCCTAATTGTTATGGTACTGGTTTACCAAATAATAAAGGACTTCTTAGGAGGCCTGA
TGCAAAGCAGCTGCTTGATAAGATGTACAATGGTCGCTTACTGCCCAACTCATAA
AA sequence
>Lus10024221 pacid=23175751 polypeptide=Lus10024221 locus=Lus10024221.g ID=Lus10024221.BGIv1.0 annot-version=v1.0
MKEASRTSRTVNYAYSGVLAERSQFSVPLSLAIDSKSVGFHVRATLENGGSTTGCSDSSDSSSPTKESQTSTSRRRCLACICSTMALIGNSSISPSIPRA
NASDGKPNPGCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGTGLPNNKGLLRRPDAKQLLDKMYNGRLLPNS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G34860 EDA3 embryo sac development arrest ... Lus10024221
[exp]
0 1
AT5G22800 EMB86, EMB263, ... EMBRYO DEFECTIVE 86, EMBRYO DE... Lus10022640
[exp]
1.7 0.9589
AT1G17220 FUG1 fu-gaeri1, Translation initiat... Lus10005581
[exp]
2.4 0.9563
AT1G08550 AVDE1, NPQ1 ARABIDOPSIS VIOLAXANTHIN DE-EP... Lus10021986
[exp]
3.0 0.9561
AT4G15110 CYP97B3 "cytochrome P450, family 97, s... Lus10039040
[exp]
3.2 0.9497
AT3G24430 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE ... Lus10043252
[exp]
3.5 0.9493
AT2G34860 EDA3 embryo sac development arrest ... Lus10023593
[exp]
4.5 0.9517
AT5G26820 RTS3, MAR1, ATI... MULTIPLE ANTIBIOTIC RESISTANCE... Lus10029841
[exp]
4.5 0.9342
AT2G32640 Lycopene beta/epsilon cyclase ... Lus10031537
[exp]
4.9 0.9474
AT1G17220 FUG1 fu-gaeri1, Translation initiat... Lus10013713
[exp]
5.9 0.9475
AT5G03880 Thioredoxin family protein (.1... Lus10017034
[exp]
7.7 0.9264

Lus10024221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.