Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74630 618 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15300 353 / 2e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 340 / 4e-109 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 323 / 5e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37570 307 / 2e-97 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G18840 305 / 1e-96 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G29760 304 / 3e-94 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 301 / 3e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G05240 296 / 5e-93 MEF19 mitochondrial editing factor 19 (.1) AT5G56310 293 / 2e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023592 [exp] 878 / 0 AT1G74630 840 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008825 [exp] 343 / 4e-111 AT1G06150 614 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10039974 [exp] 340 / 4e-110 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10010909 [exp] 322 / 4e-102 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 318 / 2e-100 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019797 [exp] 308 / 4e-97 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007341 [exp] 301 / 2e-95 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014113 [exp] 302 / 6e-95 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 305 / 9e-95 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035900 [exp] 673 / 0 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 358 / 2e-117 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 348 / 5e-113 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G125500 [exp] 340 / 1e-109 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 333 / 2e-106 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 330 / 2e-105 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 318 / 7e-102 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G207500 [exp] 317 / 4e-101 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G223900 [exp] 315 / 2e-100 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G202600 [exp] 313 / 6e-100 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024222 pacid=23175753 polypeptide=Lus10024222 locus=Lus10024222.g ID=Lus10024222.BGIv1.0 annot-version=v1.0 ATGAACTTCCTCTCTTCGTTGAGCCATTGCAAGACCCTAGCATCTGTCAAGCAACTTCATGCCAATTTACTCAAGACTGGCTTTGCCGACGACCATTTCG TGGCCGGAAAGTTACTCCTCCACTGTACAACCGCTCTCTCCGACTCACTTGAGCACGCTTCGTCCCTACTAAGCCACGCTCCAGATCCTGATGTCTTCAT GTACAATACGGTCATTCGTGGTCTGGCGGAGTCAGATACACCTGGAAATGCGATCTCTACCTTTGTTGAAATGCGGAGGGATTTGGGGTTGCCACCTGAT AGCTACTCGTTTGCTTTTGTTCTTAAAGCTTCCGCGAATTTGAAGTCCTTGAGAGTTGGATCTCAGTTGCATTGCCAAGCTTTGATTCATGGGCTGGATA GCCATCTCTTTGTTGGAACTACTTTGATTAGTTTGTACGGAGAGTGTACGTGTGTAGGTTCTGCACGGAAGATGTTCGACGAATTGCCTGAACCAAATAT TGTTGCCTGGAACGCTCTTCTCACTGTCTATTTAAGGGGAGGGGATGTGAAGGGTGCAATGGAATTGTTTGATCTGATTCCGTTCAAGAACTTGACATCT TGGAACGTGATGCTCGCTGGATGCATGAAATCAGGCGAGCTGGAGATAGCGAGGAAGCTGTTTTCTCAAATGGCCATGAAGGATGATGTCTCCTGGAGTA CAATGATTGTTGGGCTTTCCCAAAAGGGGTATTTCCGCGAGGCTTTTGGATATTTCAGGGAGTTGCGGAGAGAGGGGATTGCACCGAATGAGGTGAGCTT GACAGGAGTGCTCTCAGCGTGTGCCCAAGCTGGGGCGTTTGAGTTTGGCAAAATCTTACACGGATTGCTAGAGAAAGCTGGCTTCTTCTGGATGGTTTCT GTTAACAATGCTTTACTGGATACTTATGCTAAGTGTGGAGACGTTGCAATGGCTAGGCTTGTGTTTGAACGAATGCCTCGGGTAAGAACCATAGTTTCTT GGACGTCAATGCTGACAGGACTTGCAATGCATGGACATGGAGATGAAGCAATTGAGCTTTTTCGTGAAATGGAATCGTCTGATATTATGCCTGATGGAAT CATCTTTATTTCTCTTTTGTATGCTTGTAGTCACAGTGGATTCGTTGAACAAGGATGGACCTATTTTTGTGAAATGAAGAACCTGTACAGCATTGAGCCA GCTATTGAGCACTATGGCTGTATGGTTGATCTATATGGCCGAGCTGGCCAGCTGCAGAAGGCCTATCAATTTGCCTGTCAGATGCCGATTCCACCGAATG CAATTATCTGGCGGACTCTTCTTGGTGCTTGCAGTTTTCACGGCGATGTGAAGTTGGCGGAACAAGTGAAGCTGAAGCTTTCTGAGCTAGACCCCAAGTT GTTGAGGCTTCGGTTGGAACGAGGGTATGCTCCTGAAGTGGGTAACGTCTTGTATGACATTGAAGATGAGGAAAAAGAAGATTCCATATCCAGTCACAGC GAAAAGCTTGCTGTGGCTTTTGCGATTGGTAGATTGTGCACGGGGAAAATGATAAGAATAGTAAAGAATTTGAGGATCTGCAGGGACTGTCATGCGTTGA TGAAGCTAATTTCTGAGGTTTATGATGTTGAGATTGTGGTAAGAGATAGAAGTCGCTTTCACACTTTCAAGGATGGCTATTGTTCATGCAGAGACTACTG GTAA
AA sequence Show only first row Show all	>Lus10024222 pacid=23175753 polypeptide=Lus10024222 locus=Lus10024222.g ID=Lus10024222.BGIv1.0 annot-version=v1.0 MNFLSSLSHCKTLASVKQLHANLLKTGFADDHFVAGKLLLHCTTALSDSLEHASSLLSHAPDPDVFMYNTVIRGLAESDTPGNAISTFVEMRRDLGLPPD SYSFAFVLKASANLKSLRVGSQLHCQALIHGLDSHLFVGTTLISLYGECTCVGSARKMFDELPEPNIVAWNALLTVYLRGGDVKGAMELFDLIPFKNLTS WNVMLAGCMKSGELEIARKLFSQMAMKDDVSWSTMIVGLSQKGYFREAFGYFRELRREGIAPNEVSLTGVLSACAQAGAFEFGKILHGLLEKAGFFWMVS VNNALLDTYAKCGDVAMARLVFERMPRVRTIVSWTSMLTGLAMHGHGDEAIELFREMESSDIMPDGIIFISLLYACSHSGFVEQGWTYFCEMKNLYSIEP AIEHYGCMVDLYGRAGQLQKAYQFACQMPIPPNAIIWRTLLGACSFHGDVKLAEQVKLKLSELDPKLLRLRLERGYAPEVGNVLYDIEDEEKEDSISSHS EKLAVAFAIGRLCTGKMIRIVKNLRICRDCHALMKLISEVYDVEIVVRDRSRFHTFKDGYCSCRDYW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10024222 [exp]	0	1
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10013991 [exp]	3.6	0.8691
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10025277 [exp]	5.5	0.8083
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10014211 [exp]	7.1	0.8434
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10030542 [exp]	9.8	0.8479
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	12.0	0.8003
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10016981 [exp]	12.7	0.8126
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	14.3	0.8423
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10040321 [exp]	14.8	0.8532
AT3G61170			Tetratricopeptide repeat (TPR)...		Lus10022890 [exp]	16.9	0.8413
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10034867 [exp]	23.7	0.8234

Compare expression of checked genes

Lus10024222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.