Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52560 174 / 5e-54 HSP20-like chaperones superfamily protein (.1.2) AT4G27670 78 / 4e-17 HSP21 heat shock protein 21 (.1) AT1G53540 54 / 7e-09 HSP20-like chaperones superfamily protein (.1) AT5G51440 53 / 3e-08 HSP20-like chaperones superfamily protein (.1) AT4G25200 50 / 3e-07 ATHSP23.6-MITO mitochondrion-localized small heat shock protein 23.6 (.1) AT1G07400 49 / 4e-07 HSP20-like chaperones superfamily protein (.1) AT1G59860 47 / 1e-06 HSP20-like chaperones superfamily protein (.1) AT2G29500 43 / 4e-05 HSP20-like chaperones superfamily protein (.1) AT3G46230 43 / 5e-05 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT5G37670 41 / 0.0001 HSP15.7CI HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023653 [exp] 336 / 3e-117 AT1G52560 210 / 5e-68 HSP20-like chaperones superfamily protein (.1.2) Lus10011385 [exp] 58 / 6e-10 AT4G27670 133 / 9e-39 heat shock protein 21 (.1) Lus10006444 [exp] 57 / 1e-09 AT4G27670 135 / 1e-39 heat shock protein 21 (.1) Lus10031154 [exp] 54 / 1e-08 AT4G25200 224 / 1e-74 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10014876 [exp] 49 / 2e-07 AT4G27670 71 / 9e-16 heat shock protein 21 (.1) Lus10022322 [exp] 50 / 4e-07 AT4G27670 85 / 3e-20 heat shock protein 21 (.1) Lus10031730 [exp] 49 / 2e-06 AT4G25200 215 / 3e-69 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10000932 [exp] 45 / 2e-05 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10004039 [exp] 43 / 2e-05 AT5G37670 150 / 3e-48 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G192600 [exp] 212 / 7e-69 AT1G52560 191 / 8e-61 HSP20-like chaperones superfamily protein (.1.2) Potri.010G053400 [exp] 74 / 1e-15 AT4G27670 141 / 2e-41 heat shock protein 21 (.1) Potri.012G022400 [exp] 66 / 1e-12 AT4G27670 221 / 7e-73 heat shock protein 21 (.1) Potri.004G187202 [exp] 54 / 5e-09 AT2G29500 209 / 1e-70 HSP20-like chaperones superfamily protein (.1) Potri.010G175200 [exp] 53 / 1e-08 AT1G53540 107 / 5e-30 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 53 / 1e-08 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 53 / 2e-08 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 52 / 2e-08 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 52 / 3e-08 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 49 / 3e-07 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10024225 pacid=23175788 polypeptide=Lus10024225 locus=Lus10024225.g ID=Lus10024225.BGIv1.0 annot-version=v1.0 ATGGCCCTGCAGTCACGAATGGGGTTAATGAGGAATTTGAGCAAACGGGCATGGTCATCTGCCGCTGCTGTCCGCAGTACTACACCAACTCCTCCGTCGG TTACTACCAGTGATCGGAAATACTTCCACTGGAGTACTAGCAGTAGAGAGGATCAGTTAATGAAGAACAGCTGGTCATCAAAGAGGTTTATGGGAAGGGC TGCAGCTGGCGAGACGTCGGATGGGAAACAGGTCGCTGTGGAGACAACAACCACCGACGACAAAAACCGGGGAAGAGGCAAGAGAAGGCCCCCCGCCCTC TGGAGGAGCAACGGCCGGGAGTTCGTTCCCCCCCTTCAAGAATTCTTTCAGTCGTCGGGGTTGGGCAACGCGCTGCTGCAAGCGTCGGAGAACATAAACA GGCTGTTTCAGAATCTGAACATGTTGCCGTCCAATCTCGTCGGTCGGTTCAAGGAGAAAGACGAGTGGTACAAGCTCCGTTACGAGGTGCCAGGGCTGTC CAAGGAAGACCTCAAGATTACTGTAGACGACGGCGTTTTGACGATCAAGGGCGAACAGAAGGAGGAAGAACAAGGTGGTGAGGATGAATCTGACGACGAG TTCTGGTCAGCTAAAAGCTACGGGTTTTACCATACCACCGTTCTGCTGCCGGAAGACGCCAAAGCGGATGATATCAAGGCGGAGTTGAAAGATGGGCTGC TTCATATTACAATTCCCAGGACTGAGAGGCCCAAAGATGCCGTTAAGGAGGTCCAAATCCATTAG
AA sequence Show only first row Show all	>Lus10024225 pacid=23175788 polypeptide=Lus10024225 locus=Lus10024225.g ID=Lus10024225.BGIv1.0 annot-version=v1.0 MALQSRMGLMRNLSKRAWSSAAAVRSTTPTPPSVTTSDRKYFHWSTSSREDQLMKNSWSSKRFMGRAAAGETSDGKQVAVETTTTDDKNRGRGKRRPPAL WRSNGREFVPPLQEFFQSSGLGNALLQASENINRLFQNLNMLPSNLVGRFKEKDEWYKLRYEVPGLSKEDLKITVDDGVLTIKGEQKEEEQGGEDESDDE FWSAKSYGFYHTTVLLPEDAKADDIKAELKDGLLHITIPRTERPKDAVKEVQIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52560			HSP20-like chaperones superfam...		Lus10024225 [exp]	0	1
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	3.0	0.9746
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10006444 [exp]	3.5	0.9667
					Lus10003825 [exp]	3.7	0.9772
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	5.3	0.9772
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	5.7	0.9554
					Lus10029261 [exp]	6.5	0.9772
AT5G56990			unknown protein		Lus10029528 [exp]	7.5	0.9772
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10039134 [exp]	7.7	0.9386
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10029635 [exp]	8.4	0.9772
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10034902 [exp]	8.8	0.7207

Compare expression of checked genes

Lus10024225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.