Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47610 384 / 2e-131 transcription regulators;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023596 [exp] 655 / 0 AT3G47610 466 / 2e-163 transcription regulators;zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068900 [exp] 375 / 2e-128 AT3G47610 408 / 3e-141 transcription regulators;zinc ion binding (.1) Potri.003G168100 [exp] 231 / 3e-74 AT3G47610 238 / 2e-77 transcription regulators;zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06221 [flax] [poplar] zf-C2HC5 Putative zinc finger motif, C2HC5-type
Representative CDS sequence Show only first row Show all	>Lus10024226 pacid=23175803 polypeptide=Lus10024226 locus=Lus10024226.g ID=Lus10024226.BGIv1.0 annot-version=v1.0 ATGGAATCGGCGGTACAGTGGCTGGAGAAAGCGCTCGTAGATTTGTGCCAGAGAGTTGAGATCGGTTTGGATTTGGACAGAGACGTCATCTCCGGCATGG TCTCCTATTGCGAACTCGCCCAACCGATCGACGCCAAAGAATATCTCGGTGTAATCCACTCCTCTCCATTGTTTGCTTCTAATTGCAGTAGATTTTTTCA TTTCCAGTCTTCCATTATGTTCCTTCCTCTGAATATAGTCGGGCAGGAGGCTGGAAAGAATGTGATTGGTGAATATTTGCGCGTAGAGGCTGAACCAAAC AAAAAGAATTCTGGTTCAAATAGTATCCAAGATGAGGCCAGAATATCGAACCAAATTGGCGGACAAGGTAATTCTAGGAAGAAGAAGAAAAGTGGGAAGG TCATATCACTTGAAGAGGCTGCGAAAGGGTCGATTGTGTTCCAACAGGGTAAGCCATGTTCTTGTCAAGCACGTAGGCATAGACTAGTGAGCAATTGTTT GTCTTGTGGCAAGATAGTTTGTGAACAAGAAGGAGAAGGACCATGCTTGTTTTGCGGTGCTCTTGTTCTTAAGGAAGGAAGTTCATATGCTGGCCTAGAG GGAATATCTGCTCCAGTGTCTGATGCCGAAGTAGGAGCTGAAGCTTACGCAAAAAGGCTTGTGGATTATGACAGAGATGCTGCTTCACGTACCACTGTCA TTGACGATCAAAGTGATTACTATGAGATTGAAGGAAATAGCTGGCTTTCTAAGGAGGAAAAGGAACTTTTAACAAAGAAACAAGAGGAGATAGAAGCAGC AGAAAAAGCCAAGAGAAACAAAGTGATTATCACGTTTGATTTGGTTGGGCGCAAGGTTCTGGTGAATGAAGATGAAGTTCCAGAGCTGGAATCAGAGAAC AGAATACTGAGACCGTCAGCTGGAAAAGAAAAAGAAGTGAACCGTATTAAACCAAACACAAGCCTTAAAATACAACCAATCTTCATGGACCCAAGCCCCA ATCAAAAGTCTGCCAAGCAACAGAGTAAAGGAAATGGCGGTGCTGGCATATGCTTAGCTATCACTGGGAGAGTGCAGCATGACAACAAAGACATGAAGAA GTTGTTAATGGAAGACGAACAGATGGAAACAGGAGATCCGAATGGAAAACACTGGCATGCTCCAGCGGTGGGCTCAAGTAAGCCCCTTCAAGACGAAAAT GAATGTTCTGTAGCTTACTACTAG
AA sequence Show only first row Show all	>Lus10024226 pacid=23175803 polypeptide=Lus10024226 locus=Lus10024226.g ID=Lus10024226.BGIv1.0 annot-version=v1.0 MESAVQWLEKALVDLCQRVEIGLDLDRDVISGMVSYCELAQPIDAKEYLGVIHSSPLFASNCSRFFHFQSSIMFLPLNIVGQEAGKNVIGEYLRVEAEPN KKNSGSNSIQDEARISNQIGGQGNSRKKKKSGKVISLEEAAKGSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCLFCGALVLKEGSSYAGLE GISAPVSDAEVGAEAYAKRLVDYDRDAASRTTVIDDQSDYYEIEGNSWLSKEEKELLTKKQEEIEAAEKAKRNKVIITFDLVGRKVLVNEDEVPELESEN RILRPSAGKEKEVNRIKPNTSLKIQPIFMDPSPNQKSAKQQSKGNGGAGICLAITGRVQHDNKDMKKLLMEDEQMETGDPNGKHWHAPAVGSSKPLQDEN ECSVAYY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47610			transcription regulators;zinc ...		Lus10024226 [exp]	0	1
AT3G25570			Adenosylmethionine decarboxyla...		Lus10034412 [exp]	2.0	0.8403
AT3G25570			Adenosylmethionine decarboxyla...		Lus10000156 [exp]	3.0	0.8264
AT3G05675			BTB/POZ domain-containing prot...		Lus10021269 [exp]	3.2	0.8058
AT3G06760			Drought-responsive family prot...		Lus10013420 [exp]	5.5	0.8436
AT4G33540			metallo-beta-lactamase family ...		Lus10027583 [exp]	16.7	0.8182
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	17.7	0.7697
AT1G77800			PHD finger family protein (.1....		Lus10009786 [exp]	21.3	0.7569
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10035404 [exp]	21.8	0.7546
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10021635 [exp]	23.2	0.7629
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10025465 [exp]	30.1	0.7725

Compare expression of checked genes

Lus10024226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.