Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47630 461 / 8e-164 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023597 [exp] 608 / 0 AT3G47630 473 / 6e-169 unknown protein Lus10023590 [exp] 276 / 2e-91 AT3G47630 240 / 2e-78 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G076200 [exp] 483 / 3e-172 AT3G47630 472 / 1e-168 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF09139 [flax] [poplar] Tam41_Mmp37 Phosphatidate cytidylyltransferase, mitochondrial
Representative CDS sequence Show only first row Show all	>Lus10024227 pacid=23175795 polypeptide=Lus10024227 locus=Lus10024227.g ID=Lus10024227.BGIv1.0 annot-version=v1.0 ATGGAAACCACCGGAAGTTTATCTTCCGAGATTCAAGAGAAGTCACGTTCAGGGTCAATGCAATCTGAAGCCTCCCATGGCTTTTACAAAAAGAATGGTG GCATTAGTGAATTGCACACAGTGTCGATATGGAGAGATGAAAAGTCTAAGCTTGCTGATTTTCTGACAACTTTACCCGAAATAGAGTTTTGCTGTGTCTA TGGATCAACACTCCATCCAAATAACTCTGACAAGTCGTCAATGGTAGATTATATCCTTGGTGTGGCAGATCCTCTCAAATGGCATTCAGAGAATCTGAAA TTGAATAGAGGTCATTATGCCTCATGGATGTTTCATCTCGGGGGAGCAAAGCTGATCACCGAAGTTGCAGATGACATTGGTGTTGGTGTGCACTTCAATC CCTTTGTTACTTGGAACGGAAAGATGGTAAAATATGGGGTTGTTAGAATGCATGACTTGCTTCAAGACATCCTGAACTGGCAAAGATTTTACATAAGTGG CCGGTTGCAAAAACCCGTTCATGTACTTGTGGACAATTTAGACGTTGAGAAGTTAAATGCTGTGAACCTGAGGGCTGCTATTGCTGCTGCTCTCCTCACT TTGCCATCCAAGTTCAGTGAGGAAGATCTCTACGCTAAGATATGTAGCCTATCATACATGGGTGACTTGCGGATGCTTTTCGCAGAGGATAAGAACAAGG TGAAGAAGATTGTACAAGGGCAATTCAGTTTGTTCCAGTCTATGTATAAGCCATTCATTGAAGAATACAAAGCTAAGGATATAATAAGAGTCTCTTCATC ATATCTTTCTCAGGACTGTTGTCTGCCAGCCACGCGATCTCTCGTTTGGTCTCTTCCTCCACTGGTGAGGGAAAAAATGGGCATGCAGCTTGGGGAGAAG AAGATACTTGGCGATTCTGGTCGAGTTATACGGGAAGTCGTGTTCAGCTCAAGAGAAGAGGCTGCTAGAAGCATGCAGAAGGTGTTGAGACGTACAGTAA TGGTTTCGAGCTTAAGGCAGGCAGTGTCAGGGGTCCTGGCTGCTGGAGGGATGAATGCTGGTAGATATCTTGCTAATAAAATGCGCAAGGCTTGGAAATC TTGA
AA sequence Show only first row Show all	>Lus10024227 pacid=23175795 polypeptide=Lus10024227 locus=Lus10024227.g ID=Lus10024227.BGIv1.0 annot-version=v1.0 METTGSLSSEIQEKSRSGSMQSEASHGFYKKNGGISELHTVSIWRDEKSKLADFLTTLPEIEFCCVYGSTLHPNNSDKSSMVDYILGVADPLKWHSENLK LNRGHYASWMFHLGGAKLITEVADDIGVGVHFNPFVTWNGKMVKYGVVRMHDLLQDILNWQRFYISGRLQKPVHVLVDNLDVEKLNAVNLRAAIAAALLT LPSKFSEEDLYAKICSLSYMGDLRMLFAEDKNKVKKIVQGQFSLFQSMYKPFIEEYKAKDIIRVSSSYLSQDCCLPATRSLVWSLPPLVREKMGMQLGEK KILGDSGRVIREVVFSSREEAARSMQKVLRRTVMVSSLRQAVSGVLAAGGMNAGRYLANKMRKAWKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47630			unknown protein		Lus10024227 [exp]	0	1
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	1.4	0.9144
AT5G06350			ARM repeat superfamily protein...		Lus10004194 [exp]	7.7	0.8570
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	7.9	0.8256
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Lus10029397 [exp]	9.2	0.8318
AT3G47630			unknown protein		Lus10023597 [exp]	9.8	0.8703
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	12.2	0.8705
AT2G19490			recA DNA recombination family ...		Lus10021585 [exp]	12.3	0.7985
AT3G62080			SNF7 family protein (.1.2)		Lus10038021 [exp]	16.7	0.8162
AT3G46220			unknown protein		Lus10000127 [exp]	18.5	0.7850
AT3G09890			Ankyrin repeat family protein ...		Lus10021508 [exp]	21.3	0.7375

Compare expression of checked genes

Lus10024227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.