Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18810 77 / 2e-15 phytochrome kinase substrate-related (.1) AT2G02950 71 / 4e-13 PKS1 phytochrome kinase substrate 1 (.1) AT1G14280 56 / 2e-08 PKS2 phytochrome kinase substrate 2 (.1) AT5G04190 56 / 2e-08 PKS4 phytochrome kinase substrate 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023598 [exp] 668 / 0 AT2G02950 106 / 3e-25 phytochrome kinase substrate 1 (.1) Lus10030480 [exp] 78 / 1e-15 AT2G02950 120 / 4e-30 phytochrome kinase substrate 1 (.1) Lus10012831 [exp] 67 / 5e-12 AT1G14280 122 / 7e-31 phytochrome kinase substrate 2 (.1) Lus10037181 [exp] 67 / 5e-12 AT1G14280 140 / 2e-37 phytochrome kinase substrate 2 (.1) Lus10036746 [exp] 63 / 1e-10 AT2G02950 136 / 1e-35 phytochrome kinase substrate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062600 [exp] 169 / 8e-48 AT1G18810 100 / 5e-23 phytochrome kinase substrate-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024228 pacid=23175738 polypeptide=Lus10024228 locus=Lus10024228.g ID=Lus10024228.BGIv1.0 annot-version=v1.0 ATGGATGACACCCAGGGCAAGATCATAACCGGTCTTCGTGATGCATCATTCTCTTGTTACCTCACCACACCAGCAGAAGTTAGCAGCTTTGCTGCTAAGC TGATCACTGAAACAGAAACCCACCACAGAAAACCTCCAGAGAGTGAACAAATTGGTGTCTTCAGAGCTGAGAAGTACTTCAACATGAGACTTGGAGATGC CAGAAGTCCTCAAATCATCGACACCATCACCGGAAAGTATGTCAAGGAGAGTGACGTTGTTGATGTCCGTAAGGTGAGGAATAAGAGCAGCAGCCAGGTT GCCAGAATAAATATTCCAAGTGTGAGCTCTAGATCTGAAGCCAGCTGGAGCAGCCAGTCTGCTTTACTAAAAAGAAGCTCACAGAAGAGCTTCTTCCATG GATTCTCATGTAGAGGCTCATGCTCTGACAAGAAATCCATCCAAAACATCAACAGCTGCAACCATGGAAGGAGAGATCATGTTGGTAGTAGGAAGCAACA AGCTGTTAAAGTTGAAGTTGCTCACAATGCTGCCAAGTGGGAAGCAGCAAGAAAGGTGCAGTCTTCATCATCAAGATTCCAGAACCCAATTGGAATACAA GGAAAGAAGGCATCTTTACAAGAAGAAGAAGGGAGGAAATCTCTGGATGTATTTGGGTCAAAGTCAATGAAGAAAGAAGACAACATAGCAGTGGATTTGC AGAGGAAGTTGTCTGTGCTAACATGGGATGCAATTCCAAATCCAAACCAACAAGCCAAAAAACCCACGAAGGAAGACAATTTCAGCCTGGATGATGAGGT GGCAAGCGATGCAAGTTCGGATCTTTTCGAAATTGAGACGGCCTCAGGGAGCACCCGGGTGTTGACTAATTATAAGAAGAAGATTACATGTGAAGGTGGT TATGAGCCGAGCGAGGCAAGTGTGGAATGGAGTGTAGTCACTGCAAGTGCTGCTGCACCTGAATTCTCGTTTGCTTCGGAGTGTGGTGATGATCATAACA TGTTATCGGGAGCATCAAAGGGAGAAAAAGGGAATTCTGTTCCACCAAAGGGGAAAAAGTATAATGGAATCCTGCTGAGTTGCAAAACCCTCAAGGCTGT TGATGTTGCTGAAACAGCACAACACAAGGGGAAACAGTTCTCTGCCATGTCAGCTTCCATGGAAGTTCAAAGAAGGTGA
AA sequence Show only first row Show all	>Lus10024228 pacid=23175738 polypeptide=Lus10024228 locus=Lus10024228.g ID=Lus10024228.BGIv1.0 annot-version=v1.0 MDDTQGKIITGLRDASFSCYLTTPAEVSSFAAKLITETETHHRKPPESEQIGVFRAEKYFNMRLGDARSPQIIDTITGKYVKESDVVDVRKVRNKSSSQV ARINIPSVSSRSEASWSSQSALLKRSSQKSFFHGFSCRGSCSDKKSIQNINSCNHGRRDHVGSRKQQAVKVEVAHNAAKWEAARKVQSSSSRFQNPIGIQ GKKASLQEEEGRKSLDVFGSKSMKKEDNIAVDLQRKLSVLTWDAIPNPNQQAKKPTKEDNFSLDDEVASDASSDLFEIETASGSTRVLTNYKKKITCEGG YEPSEASVEWSVVTASAAAPEFSFASECGDDHNMLSGASKGEKGNSVPPKGKKYNGILLSCKTLKAVDVAETAQHKGKQFSAMSASMEVQRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10024228 [exp]	0	1
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	2.4	0.9229
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	4.7	0.9165
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	5.2	0.9098
AT1G60010			unknown protein		Lus10010708 [exp]	7.7	0.9095
AT2G17650			AMP-dependent synthetase and l...		Lus10041825 [exp]	9.2	0.9030
AT3G12620			Protein phosphatase 2C family ...		Lus10019893 [exp]	9.2	0.8934
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	9.7	0.9088
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	9.9	0.8966
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	11.2	0.8989
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	11.4	0.8974

Compare expression of checked genes

Lus10024228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.