Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18800 328 / 2e-114 NRP2 NAP1-related protein 2 (.1) AT1G74560 325 / 8e-113 NRP1 NAP1-related protein 1 (.1.2.3) AT2G19480 69 / 4e-13 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT3G13782 67 / 9e-13 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1) AT4G26110 67 / 2e-12 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT5G56950 63 / 3e-11 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023599 [exp] 421 / 1e-150 AT1G18800 334 / 2e-116 NAP1-related protein 2 (.1) Lus10008620 [exp] 312 / 3e-108 AT1G18800 272 / 1e-92 NAP1-related protein 2 (.1) Lus10001231 [exp] 69 / 2e-13 AT5G56950 229 / 6e-73 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) Lus10026197 [exp] 64 / 1e-11 AT4G26110 229 / 7e-73 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10011956 [exp] 64 / 2e-11 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10027615 [exp] 63 / 3e-11 AT2G19480 385 / 3e-134 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011957 [exp] 63 / 4e-11 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10037630 [exp] 62 / 9e-11 AT2G19480 386 / 1e-133 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10042106 [exp] 59 / 5e-10 AT4G26110 242 / 1e-77 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062700 [exp] 358 / 5e-126 AT1G18800 324 / 2e-112 NAP1-related protein 2 (.1) Potri.012G069100 [exp] 355 / 2e-124 AT1G18800 325 / 7e-113 NAP1-related protein 2 (.1) Potri.017G080700 [exp] 315 / 6e-109 AT1G18800 292 / 4e-100 NAP1-related protein 2 (.1) Potri.004G128701 [exp] 263 / 8e-89 AT1G18800 244 / 1e-81 NAP1-related protein 2 (.1) Potri.006G148600 [exp] 71 / 8e-14 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.018G067800 [exp] 69 / 2e-13 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 64 / 3e-11 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 62 / 8e-11 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 61 / 1e-10 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 59 / 7e-10 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [flax] [poplar] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Lus10024229 pacid=23175737 polypeptide=Lus10024229 locus=Lus10024229.g ID=Lus10024229.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGACAAGGGAAAGAAGATGAAGGTGGAGAAAGGCGAGGAGGAGAATCACCATATCGATGAAGAGCTTGTTCTCTCCATTGAGAAGCTCC AGGAGATCCAGGACGAGCTTGAAAAGATCAATGAAGAGGCGAGTGATAAGGTGCTGGAAGTGGAACAGAAATATAATGTGGTGCGCAAACCAGTCTATGA AAAGAGGAATGAGATCATCAAATCCATTCCTGACTTTTGGTTGACAGCCTTTTTAAGCCATCCTGCACTGGGTAATCTTCTAAATGAAGAAGACCAAAAG GTATTTAAGCACCTAACTTCCTTGGAAGTAGAAGACTGTAAAGATGTGAAATCAGGTTACTCCATCACATTTAATTTTGAGGGCAATCCGTATTTTGAAG ATGCAAAGCTCACAAAGACATTCACCTTCCTAGATGAGGGGACAACTGAAATTTCTGCCACACCCATCAAGTGGAAAGAAGGCATGGCTCTACCTAATGG AGTTAGCCATGAGAAGAAAGGCAACAAGAGGCCTTTGGCTGAGGAGAGTTTCTTTGGCTGGTTCAGTAATACTCAACCAAAAGATATGATGGAAGAGATG CAAGATGAGATTGCAGAGATCATCAAGGAGGATTTATGGCCTAATCCTCTCGCTTACTTTAACAACGACCCGGATGAAGAGGATTTTGAAGGGGATGAAG GGGATAAGGAAGGTGATGATTCGGAGGAAGACGATGACGAACAGGATGACGATGAAGATGATGGGGAAGATGAAGAAGGCGAAGAGGAGTAG
AA sequence Show only first row Show all	>Lus10024229 pacid=23175737 polypeptide=Lus10024229 locus=Lus10024229.g ID=Lus10024229.BGIv1.0 annot-version=v1.0 MAAADKGKKMKVEKGEEENHHIDEELVLSIEKLQEIQDELEKINEEASDKVLEVEQKYNVVRKPVYEKRNEIIKSIPDFWLTAFLSHPALGNLLNEEDQK VFKHLTSLEVEDCKDVKSGYSITFNFEGNPYFEDAKLTKTFTFLDEGTTEISATPIKWKEGMALPNGVSHEKKGNKRPLAEESFFGWFSNTQPKDMMEEM QDEIAEIIKEDLWPNPLAYFNNDPDEEDFEGDEGDKEGDDSEEDDDEQDDDEDDGEDEEGEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10024229 [exp]	0	1
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10023599 [exp]	1.0	0.9518
AT4G24830			arginosuccinate synthase famil...		Lus10033978 [exp]	2.0	0.8304
AT2G15910			CSL zinc finger domain-contain...		Lus10021009 [exp]	5.5	0.7500
AT2G25830			YebC-related (.1)		Lus10038722 [exp]	6.0	0.7410
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10043405 [exp]	6.7	0.8099
AT1G74270			Ribosomal protein L35Ae family...		Lus10035539 [exp]	6.9	0.7861
AT2G47640			Small nuclear ribonucleoprotei...		Lus10013840 [exp]	13.9	0.7715
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10012875 [exp]	15.8	0.7751
AT1G18440			Peptidyl-tRNA hydrolase family...		Lus10042977 [exp]	18.4	0.7190
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Lus10026901 [exp]	18.5	0.7496

Compare expression of checked genes

Lus10024229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.