Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19000 145 / 1e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G08640 142 / 1e-39 ATFLS1, FLS flavonol synthase 1 (.1.2) AT1G77330 140 / 4e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 141 / 5e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 139 / 4e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 136 / 2e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 135 / 5e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT3G21420 133 / 4e-36 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 133 / 4e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 132 / 8e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023602 [exp] 451 / 6e-161 AT3G11180 158 / 5e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10031150 [exp] 211 / 7e-67 AT4G10490 114 / 1e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021002 [exp] 152 / 2e-43 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10030185 [exp] 146 / 2e-41 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000857 [exp] 142 / 8e-40 AT1G77330 440 / 2e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10024882 [exp] 142 / 1e-39 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023851 [exp] 139 / 1e-38 AT3G19000 474 / 9e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10006518 [exp] 139 / 2e-38 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10028678 [exp] 137 / 4e-38 AT1G77330 435 / 1e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069200 [exp] 371 / 2e-129 AT3G19000 147 / 2e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G146100 [exp] 144 / 3e-40 AT3G19000 374 / 5e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.012G006300 [exp] 142 / 1e-39 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G146000 [exp] 141 / 3e-39 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.016G117100 [exp] 140 / 1e-38 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G182700 [exp] 138 / 2e-38 AT1G77330 461 / 4e-165 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 138 / 3e-38 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 138 / 4e-38 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 138 / 6e-38 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 137 / 6e-38 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10024230 pacid=23175766 polypeptide=Lus10024230 locus=Lus10024230.g ID=Lus10024230.BGIv1.0 annot-version=v1.0 ATGGCTCCTGAAATTAATACCGCAGCAAGCATTCCTGTGGTGGACCTCTCGCCTTTCTTCTCCTCCGACTCCTCCGACGACGACCAGTTGATATTGAAAA AGGAAAAAGTGTTGGAGACGGTGAGGAAAGCATGTTCCGTGTACGGATTCTTCCAGATAGTCAACCACGGGGTCCCCACTGAACTCATGAAGCGTGCTCT CCAAGTTTCCAAGACATTCTTCGAGCTTCCCGATGAGGAGAAGCGCAAGTTCAGCCCTGGAAATGGAGCTCCACTGCCGGCTGGATACAATCGTCAACCT CTTCATTCTGAAGACAAGAACGAGTACCTTCTCGTCTTCGCTCCCCAATCCCCTTTCAACGTCTACCCCACTCACCCTTCTCAACTCAGGGAGGTTGTGG AGGAGGTGTTCTTGTGTCTAAGGAAGACCGGAACATTGATAGAAAGCATAATCAACGACTGCCTTGGTCTGCCTCCGGGGTTTTTACAACAGTTCAATTC CTACAGGAATTGGGATTTCATGACCCCACTTCACTATTTCCCGGCCACGGACAGCGAGGACAACGGTATCACACCCCACCAGGACGGCAACTCCGTCACC TTTGTGTTCCAGGACGATGCCGGAGGGTTGGAGGTCCTTAGAGGGAAGGACTGGATTCCGGCCACTCCTTCTCCGGACACCATTGTCGTCAACATTGGAG ATGTTATCCAGGCGTTGAGCAACAACAAGTTCAAGAGCGCAGTGCACAGGGTGGTGAGGCCTCAAGGAAAGAGCCGATACTCGTACGCATTCTTCTACAA CTTGTCCGGTGAAAAATATGTGGAGCCATTGCCTGAGTTCACGTCGGAAGTTGGGGAGCCGCCGCGATACCGCAAGTTTCAGTACGGGGAGTACTTGGAC ACGAGTGGACTTGCAACTGAGGCTTAG
AA sequence Show only first row Show all	>Lus10024230 pacid=23175766 polypeptide=Lus10024230 locus=Lus10024230.g ID=Lus10024230.BGIv1.0 annot-version=v1.0 MAPEINTAASIPVVDLSPFFSSDSSDDDQLILKKEKVLETVRKACSVYGFFQIVNHGVPTELMKRALQVSKTFFELPDEEKRKFSPGNGAPLPAGYNRQP LHSEDKNEYLLVFAPQSPFNVYPTHPSQLREVVEEVFLCLRKTGTLIESIINDCLGLPPGFLQQFNSYRNWDFMTPLHYFPATDSEDNGITPHQDGNSVT FVFQDDAGGLEVLRGKDWIPATPSPDTIVVNIGDVIQALSNNKFKSAVHRVVRPQGKSRYSYAFFYNLSGEKYVEPLPEFTSEVGEPPRYRKFQYGEYLD TSGLATEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10024230 [exp]	0	1
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	2.0	0.9384
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10023601 [exp]	3.2	0.9338
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	4.6	0.9102
AT5G01740			Nuclear transport factor 2 (NT...		Lus10001261 [exp]	4.9	0.8369
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10035402 [exp]	5.3	0.8509
AT5G36210			alpha/beta-Hydrolases superfam...		Lus10032765 [exp]	5.8	0.7482
					Lus10001343 [exp]	6.0	0.9074
AT2G44060			Late embryogenesis abundant pr...		Lus10019367 [exp]	6.3	0.8648
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	6.5	0.8630
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	7.7	0.7994

Compare expression of checked genes

Lus10024230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.