Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20950 110 / 2e-28 Glycosyl hydrolase family protein (.1.2) AT5G04885 100 / 7e-25 Glycosyl hydrolase family protein (.1) AT5G20940 89 / 5e-21 Glycosyl hydrolase family protein (.1) AT3G47040 88 / 1e-20 Glycosyl hydrolase family protein (.1.2) AT3G47010 86 / 5e-20 Glycosyl hydrolase family protein (.1.2) AT3G47000 83 / 7e-19 Glycosyl hydrolase family protein (.1) AT3G47050 79 / 1e-17 Glycosyl hydrolase family protein (.1.2) AT3G62710 73 / 2e-15 Glycosyl hydrolase family protein (.1) AT2G30840 58 / 2e-10 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 54 / 9e-09 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023604 [exp] 142 / 1e-39 AT5G20950 822 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10022413 [exp] 124 / 3e-33 AT5G20950 837 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10001151 [exp] 119 / 2e-31 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10023602 [exp] 114 / 5e-31 AT3G11180 158 / 5e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10008432 [exp] 108 / 7e-28 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013390 [exp] 108 / 1e-27 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 99 / 1e-24 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 99 / 3e-24 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10013646 [exp] 97 / 6e-24 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G153900 [exp] 115 / 3e-30 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 103 / 6e-26 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 103 / 6e-26 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 99 / 2e-24 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.008G013700 [exp] 98 / 5e-24 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G154802 [exp] 89 / 4e-22 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 84 / 7e-20 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G042800 [exp] 80 / 9e-18 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.012G069200 [exp] 73 / 1e-15 AT3G19000 147 / 2e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G154032 [exp] 67 / 6e-14 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10024232 pacid=23175746 polypeptide=Lus10024232 locus=Lus10024232.g ID=Lus10024232.BGIv1.0 annot-version=v1.0 ATGACCCAACTTCACTATTTCCCAACGATTTCGGACGTCGAGAACGAAGGTAACTCACCCCATGAGGACACCAATTGCGTCACCATTATGTTCCAGGACG ATACTGGAGGGTTCGAGGTCCCGAGAGGCAAGGACTGGATTTCTGTCCCTCCCTATCCCAACTCCATGAACGTCAACATTAGAGATGTACTTCAGGTGAT GATTCCCTATGGATTTAGGGAGTTCATTAGAGACGTGACGTTCCAAGTTGAGAAGAAGATAATCCCAACTTCCAGGATTGATGATGCCGTCTACAGGATT TTAAGAGTCGAGTTTGCAATGGGGTTGTTTGAGTCGCCACTTAGTGATCTCACCATGGCAAATGAGCTTGGAAAGAAGGAGCATCGAGACTTGGCAAGAG AAGCGGAGAACCCTAGTGTGAAGTTTATCGAATCAAACGACTTCTCCTATGCCATAGTGGTTGTTGGGGAGCAACCCTATGCAGAAAATATGGGGATAGC AGGAACCTAA
AA sequence Show only first row Show all	>Lus10024232 pacid=23175746 polypeptide=Lus10024232 locus=Lus10024232.g ID=Lus10024232.BGIv1.0 annot-version=v1.0 MTQLHYFPTISDVENEGNSPHEDTNCVTIMFQDDTGGFEVPRGKDWISVPPYPNSMNVNIRDVLQVMIPYGFREFIRDVTFQVEKKIIPTSRIDDAVYRI LRVEFAMGLFESPLSDLTMANELGKKEHRDLAREAENPSVKFIESNDFSYAIVVVGEQPYAENMGIAGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20950			Glycosyl hydrolase family prot...		Lus10024232 [exp]	0	1

Compare expression of checked genes

Lus10024232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.