Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47640 186 / 9e-59 bHLH PYE, bHLH047, POPEYE, PYE1 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G19860 79 / 3e-17 bHLH bHLH121 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G36060 72 / 1e-14 bHLH bHLH11, bHLH011 basic Helix-Loop-Helix 11, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G54680 68 / 2e-13 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23210 67 / 5e-13 bHLH bHLH34, bHLH034 basic Helix-Loop-Helix 34, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G51070 62 / 1e-11 bHLH bHLH115 basic Helix-Loop-Helix 115, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G14410 61 / 6e-11 bHLH bHLH104 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008622 [exp] 162 / 8e-51 AT3G47640 100 / 6e-27 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10042194 [exp] 124 / 4e-36 AT3G47640 94 / 1e-24 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10020069 [exp] 68 / 2e-13 AT5G54680 231 / 5e-77 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10022186 [exp] 65 / 2e-12 AT4G14410 218 / 4e-71 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10011167 [exp] 65 / 3e-12 AT5G54680 331 / 4e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028456 [exp] 64 / 1e-11 AT3G19860 225 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10041908 [exp] 64 / 1e-11 AT3G19860 224 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10043076 [exp] 60 / 1e-10 AT5G54680 330 / 8e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041148 [exp] 52 / 9e-08 AT4G14410 211 / 1e-68 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142700 [exp] 245 / 6e-82 AT3G47640 170 / 1e-52 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.003G074400 [exp] 225 / 2e-74 AT3G47640 158 / 5e-48 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G129600 [exp] 78 / 1e-16 AT3G19860 238 / 2e-76 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G168100 [exp] 78 / 1e-16 AT3G19860 250 / 4e-82 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.005G113400 [exp] 74 / 2e-15 AT3G19860 211 / 1e-66 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G132400 [exp] 60 / 2e-10 AT5G54680 222 / 7e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G031000 [exp] 59 / 3e-10 AT5G54680 264 / 2e-89 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G031800 [exp] 47 / 4e-06 AT5G54680 226 / 8e-75 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G416600 [exp] 45 / 3e-05 AT5G54680 223 / 4e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024233 pacid=23175729 polypeptide=Lus10024233 locus=Lus10024233.g ID=Lus10024233.BGIv1.0 annot-version=v1.0 ATGACTTCGGATACTTCCGGAGATCATGTTGCTGTTGATGAAACAGTAGAACCTGCTGCTGAAAAACGGTCATGTAAAGGCAAGAATAAGGCAAAAGTTC CCAAAAGGGTTCACAAGGCTGAGAGAGAGCGACTGAAGCGTGAGCAATTGAATGATCTTTTCGACGACCTGGCTACAGCTCTCGAAATGGAGCAAGCAAA CAGTGGTAAAGCCTCGATCTTGAACGAAGCTGCTCGAATTCTGAAGGATCTGCGTGGACAAATTGATGCCCTGAAGAAGGAAAATGCTTCTCTTCTTTTC GAGTCTCGTTATGTAACTACTGAGAAGAATGAGCTCAAGGACGAGAACACTGTCCTTGAAACTCAAATAGGGGATCTGCAGAGCGAGGTAGAAGCTCGTT TAGCCCAATTGAAACCCGATTTGAACATCCCACCACCATCCATGGAGTTTCAGCAACCAGAAACTGCAGCAGGATTACCACCTCACTTTCCGGGACACCA CATTCTTGATCCCTCAATGCAACAACCCCCCGCGGTTTTCATGGTCCCTTTCCATCCAGATATCTCGTCATTTCAATCAATGCAGTCAAACATCAGCAAA CCACACGCCAGGTATCCCACAGCGGCTGATTCCTGGCCGTCCCAACTTTTAGGTGGTAAAGAAGTTATAGCAGGAGCTAACAATGAAAGTATGTGCAACC CTCGGGGAATATTTGAGAACGGGCCCTAG
AA sequence Show only first row Show all	>Lus10024233 pacid=23175729 polypeptide=Lus10024233 locus=Lus10024233.g ID=Lus10024233.BGIv1.0 annot-version=v1.0 MTSDTSGDHVAVDETVEPAAEKRSCKGKNKAKVPKRVHKAERERLKREQLNDLFDDLATALEMEQANSGKASILNEAARILKDLRGQIDALKKENASLLF ESRYVTTEKNELKDENTVLETQIGDLQSEVEARLAQLKPDLNIPPPSMEFQQPETAAGLPPHFPGHHILDPSMQQPPAVFMVPFHPDISSFQSMQSNISK PHARYPTAADSWPSQLLGGKEVIAGANNESMCNPRGIFENGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10024233 [exp]	0	1
AT2G35710			Nucleotide-diphospho-sugar tra...		Lus10008518 [exp]	2.6	0.8311
AT4G16600			Nucleotide-diphospho-sugar tra...		Lus10004717 [exp]	4.9	0.8719
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10008129 [exp]	7.7	0.8577
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013584 [exp]	8.0	0.8661
AT4G28300			Protein of unknown function (D...		Lus10018593 [exp]	9.2	0.7656
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10012826 [exp]	9.9	0.8107
AT1G30755			Protein of unknown function (D...		Lus10017259 [exp]	11.0	0.7719
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	11.2	0.7954
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	13.0	0.8321
AT1G25550	GARP		myb-like transcription factor ...		Lus10041485 [exp]	14.2	0.7631

Compare expression of checked genes

Lus10024233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.