Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26030 609 / 0 FC1, FC-I, ATFC-I ferrochelatase 1 (.1.2) AT2G30390 483 / 1e-167 FC2, FC-II, ATFC-II ferrochelatase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023607 [exp] 868 / 0 AT5G26030 652 / 0.0 ferrochelatase 1 (.1.2) Lus10007924 [exp] 761 / 0 AT5G26030 640 / 0.0 ferrochelatase 1 (.1.2) Lus10013461 [exp] 570 / 0 AT5G26030 473 / 1e-165 ferrochelatase 1 (.1.2) Lus10019224 [exp] 475 / 2e-164 AT2G30390 729 / 0.0 ferrochelatase 2 (.1.2) Lus10004292 [exp] 462 / 1e-159 AT2G30390 713 / 0.0 ferrochelatase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232100 [exp] 655 / 0 AT5G26030 620 / 0.0 ferrochelatase 1 (.1.2) Potri.004G138400 [exp] 494 / 4e-172 AT2G30390 747 / 0.0 ferrochelatase 2 (.1.2) Potri.T010900 [exp] 494 / 4e-172 AT2G30390 756 / 0.0 ferrochelatase 2 (.1.2) Potri.T010901 [exp] 494 / 9e-172 AT2G30390 734 / 0.0 ferrochelatase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0043 [flax] [poplar] Chelatase PF00762 [flax] [poplar] Ferrochelatase Ferrochelatase
Representative CDS sequence Show only first row Show all	>Lus10024237 pacid=23175780 polypeptide=Lus10024237 locus=Lus10024237.g ID=Lus10024237.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCTTCTATCTCCGCCGCCCTTCCCCATACCAAACTCTACGTCGCACCTTCTCCTAATTTCTCCAGGTCATGTTCTGAGGTCGGATCAGTTC AATCCGTGTGTTGCGTTTCGTCTGGGAAATTAGAACCTCGTGATAATCCGTCTTCTCTGGTGTTAAGTGCGAGTCCTTGTGATAAATTAACCCCCATTAA TTCAGGAGGTTTAGCTCGGAGGCGGAATGTTGTTACCCAATCATATGCTGCTCCTCCGGCTAGTATCTGCTCCTTCGACGAGACTTCTGTTATTCAGAAT CATACCAGAACCGCTGAAGAGAAGATTGGTGTGCTGCTTCTGAACCTTGGAGGGCCGGACAACCTTAATGATGTTCAGCCATTTTTGTTCAATTTGTTTG CGGATCCGGATATCATTCGATTACCTAGGCTATTCCAGTTTCTTCAGAGGCCGTTGGCACAATTGATTTCCACTCTCCGAGCGCCTAAAAGTAAAGAAGG GTATGCTGCCATTGGCGGTGGCTCACCTTTGCGTAAAATAACCGATGAGCAGGCATATGCTATCAAGGATGCTTTGCAAGCAAAGGATGTAAGCGCAAAT GTCTATGTTGGAATGCGGTACTGGTACCCTTTCACTGAGGAGGCAATTCAGCAGATCAAGAAGGATAGGATAACAAAGCTTGTTGTGCTGCCACTATATC CTCAATTTTCCATATCTACAACTGGTTCCAGTCTCCGTGTTCTCGAGAATATATTCAGGGAGGATGTGTATCTCTCAAGACTTCCTGTTTCTATCATACA GTCATGGTATCAAAGACAAGGTTACGTAAATTCTATGGCTGATTTGATAGAGGAGGAATTGCAGACATTTTCCAAGCCTGATGAAGTAATGGTATTCTTC AGTGCTCATGGAGTGCCAGTCAGTTATGTGGAAGAAGCAGGAGATCCGTACAGAGATCAGATGGAGGATTGCATATATTTGATTATGCAAGAGCTGAAGG CAAGGGGAGTTAACAATGATCATACTCTTGCTTACCAGAGCCGAGTTGGACCAGTGCAATGGTTGAAGCCCTATACTGATGAGGTCCTAGTGGAGCTTGG GAAGAAAGGGGTGAAAAGCCTCTTAGCAGTCCCTGTTAGCTTTGTGAGTGAGCATATAGAAACACTTGAAGAAATCGACATGGAGTACAGGGAACTGGCA CTTGAATCTGGGATTGAGAACTGGGGACGAGTACCTGCTTTAGGTTGCACTTCGTCGTTCATCACTGATCTGGCCGATGCAGTTGTTGAAGTGTTGCCAT CTGCTAAAGCGATTGTAACCTCAACTGACAGTGCAGAAGAAGCTGACGAATATGACCCCTTAAAATACGCAATCAAATTGTTATTTGGTTCAGTTTTAGC GTTTGTGCTTCTTTTCTCACCGAAGATGTTCCTCGCTTTCAGGAACCGGCTTCTTTAG
AA sequence Show only first row Show all	>Lus10024237 pacid=23175780 polypeptide=Lus10024237 locus=Lus10024237.g ID=Lus10024237.BGIv1.0 annot-version=v1.0 MEAASISAALPHTKLYVAPSPNFSRSCSEVGSVQSVCCVSSGKLEPRDNPSSLVLSASPCDKLTPINSGGLARRRNVVTQSYAAPPASICSFDETSVIQN HTRTAEEKIGVLLLNLGGPDNLNDVQPFLFNLFADPDIIRLPRLFQFLQRPLAQLISTLRAPKSKEGYAAIGGGSPLRKITDEQAYAIKDALQAKDVSAN VYVGMRYWYPFTEEAIQQIKKDRITKLVVLPLYPQFSISTTGSSLRVLENIFREDVYLSRLPVSIIQSWYQRQGYVNSMADLIEEELQTFSKPDEVMVFF SAHGVPVSYVEEAGDPYRDQMEDCIYLIMQELKARGVNNDHTLAYQSRVGPVQWLKPYTDEVLVELGKKGVKSLLAVPVSFVSEHIETLEEIDMEYRELA LESGIENWGRVPALGCTSSFITDLADAVVEVLPSAKAIVTSTDSAEEADEYDPLKYAIKLLFGSVLAFVLLFSPKMFLAFRNRLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10024237 [exp]	0	1
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10023607 [exp]	1.0	0.9345
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10034872 [exp]	6.0	0.8352
AT4G02920			unknown protein		Lus10027996 [exp]	6.3	0.8433
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	8.9	0.8533
AT2G36430			Plant protein of unknown funct...		Lus10035568 [exp]	22.9	0.9021
AT1G74360			Leucine-rich repeat protein ki...		Lus10003478 [exp]	23.3	0.8720
AT5G65205			NAD(P)-binding Rossmann-fold s...		Lus10040878 [exp]	30.4	0.8180
AT4G37420			Domain of unknown function (DU...		Lus10013221 [exp]	37.5	0.8595
AT3G15760			unknown protein		Lus10043269 [exp]	40.2	0.8077
AT3G45040			phosphatidate cytidylyltransfe...		Lus10041335 [exp]	54.1	0.8466

Compare expression of checked genes

Lus10024237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.