Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26930 147 / 3e-41 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 139 / 6e-38 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G14330 133 / 7e-36 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74510 129 / 2e-34 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G11580 102 / 3e-24 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G60570 92 / 5e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G27150 81 / 5e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G40680 74 / 1e-14 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G22040 64 / 3e-11 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 57 / 3e-09 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023608 [exp] 280 / 1e-92 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10038724 [exp] 259 / 9e-83 AT5G11580 629 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10012474 [exp] 196 / 8e-63 AT1G27060 89 / 2e-21 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10008730 [exp] 195 / 1e-61 AT1G27060 132 / 1e-36 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036735 [exp] 153 / 3e-43 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10012841 [exp] 152 / 8e-43 AT2G02870 568 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10030489 [exp] 150 / 6e-42 AT2G02870 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037196 [exp] 147 / 4e-41 AT2G02870 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037413 [exp] 105 / 1e-25 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063200 [exp] 151 / 2e-42 AT1G74510 529 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.018G044400 [exp] 146 / 9e-40 AT5G11580 578 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.019G042100 [exp] 114 / 1e-28 AT5G60570 419 / 3e-145 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G077800 [exp] 112 / 8e-28 AT5G60570 402 / 2e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G331500 [exp] 83 / 8e-18 AT3G27150 370 / 2e-125 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G069500 [exp] 76 / 2e-15 AT3G27150 355 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 64 / 3e-11 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G170000 [exp] 62 / 8e-11 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 62 / 9e-11 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 60 / 7e-10 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024239 pacid=23175790 polypeptide=Lus10024239 locus=Lus10024239.g ID=Lus10024239.BGIv1.0 annot-version=v1.0 ATGGTGAAGCAATCCTCACTACTGGTGACGGGTAGAAAACAAACGGTTAATGACACCGACTCCAAACCCCAGCCGCTGCTGATAGGTATGCTGGGGCGGG ACCTATCAATCAGCTGCCTACTCCGCTTACCTAGGATCATATACGACACCGTTTCATCCATCAGCATGAGCTTCAAGTCCGTAATCAAAAGCGGCGAGGT CTACAAGCTACGACGAAAAGCCGGGATATTCGAACCCTGGGTCTACTTCTCATGCAACATCATGGAATGGGAAGCCTTCGACTCACTCACCAACACCTGG ATCCGCCTCCAGAAAATGCCATTCGAAAGCTACTTTGCCTTCTCCGATAAGGAGTCCCTCGCCGTCGGGACACACATCCTCGTCTTCGGCCAGGAAGTCC ACGCCCCGGCAGTGTACAGGTACAGCCTCCTCGAGAACAAGTGGACCACCACCGCCCAAAACCTAACTAAAGTGATGAACACACCTCACGCACATACCGT TCTTGTTACGGATGGTGGATACAGGCTTTGGTCTTGGGGTAGGGGAAGGAGTGGTGTTCTTGGAAATGGAAAGACTATTGATTTTTACGCCCCTAGTCAT GTGTTAAGGCCTCCACTAGGTGAGGATTCCAAGGAACAACAGTTCGGTGATGTTAATGAAAAGGATGAAGTTGGAGACGAGGGTTTTGATATTGACAAAA GACTATCCACTGCAATGGAGGAGATGAAGCTTCTCCGATCCAAATATTCATCGATGGAGCAACACGCTAGCATGCTTCATGGTCTTATTTTTGGTGAACT TTTAAGGGAACATGAAATTACTAACTCCTGGCAGCAGTCAAGTGGTGTTGATATCACAAGACAATGGGAAGACATGTTAGAATTAGTAGATGAATAA
AA sequence Show only first row Show all	>Lus10024239 pacid=23175790 polypeptide=Lus10024239 locus=Lus10024239.g ID=Lus10024239.BGIv1.0 annot-version=v1.0 MVKQSSLLVTGRKQTVNDTDSKPQPLLIGMLGRDLSISCLLRLPRIIYDTVSSISMSFKSVIKSGEVYKLRRKAGIFEPWVYFSCNIMEWEAFDSLTNTW IRLQKMPFESYFAFSDKESLAVGTHILVFGQEVHAPAVYRYSLLENKWTTTAQNLTKVMNTPHAHTVLVTDGGYRLWSWGRGRSGVLGNGKTIDFYAPSH VLRPPLGEDSKEQQFGDVNEKDEVGDEGFDIDKRLSTAMEEMKLLRSKYSSMEQHASMLHGLIFGELLREHEITNSWQQSSGVDITRQWEDMLELVDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26930			Galactose oxidase/kelch repeat...		Lus10024239 [exp]	0	1
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10034952 [exp]	1.0	0.9145
					Lus10017219 [exp]	1.7	0.8896
AT5G66550			Maf-like protein (.1)		Lus10040204 [exp]	2.4	0.8940
AT5G51010			Rubredoxin-like superfamily pr...		Lus10027889 [exp]	3.5	0.8632
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10010842 [exp]	4.0	0.8884
AT3G48200			unknown protein		Lus10008827 [exp]	5.9	0.8618
AT1G06510			unknown protein		Lus10031459 [exp]	6.5	0.8283
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10022111 [exp]	6.9	0.8551
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	8.8	0.8401
AT2G39260			binding;RNA binding (.1)		Lus10030801 [exp]	9.9	0.8512

Compare expression of checked genes

Lus10024239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.