Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47700 877 / 0 MAG2 maigo2, RINT-1 / TIP-1 family (.1) AT1G08400 414 / 6e-133 RINT-1 / TIP-1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023609 [exp] 1436 / 0 AT3G47700 918 / 0.0 maigo2, RINT-1 / TIP-1 family (.1) Lus10036104 [exp] 434 / 3e-140 AT1G08400 687 / 0.0 RINT-1 / TIP-1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063100 [exp] 999 / 0 AT3G47700 872 / 0.0 maigo2, RINT-1 / TIP-1 family (.1) Potri.009G020600 [exp] 491 / 6e-162 AT1G08400 713 / 0.0 RINT-1 / TIP-1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04437 [flax] [poplar] RINT1_TIP1 RINT-1 / TIP-1 family
Representative CDS sequence Show only first row Show all	>Lus10024240 pacid=23175756 polypeptide=Lus10024240 locus=Lus10024240.g ID=Lus10024240.BGIv1.0 annot-version=v1.0 ATGACGGAATCAACCTTAACTCTCCCTCCGCCCGCGGTTCTTTCCTCCTCCGTCATCACATTTCTGAACAATAGACTCAAAGACGAGCAAGATCTCGAGC AGGCACCCGATATAGTCTCGGAGCTACAGTCACAATGTGTCGATTTGGACCAGTCTCTCACTTCCCTCAATTCCACTCTCCAATCGAGTCTTCTTGATTA CGCCTCCTCCTCCGATCGAATTCACGGTATCGTCACTGATACCTCTACCAAGCTCACCGATCTCGGCTCATTGACCTCCGCTTCTAGTTCTTCTTCAGAT GGAGGATTGAAGGAGCAGGTATTGGCGGAAGAGTTGCCGGCGCTGGCAAAGGAGGTTGCTAGAGTGGAAATAGTTCGAGCTTATGCTAATACTGCATTGA AGCTTGACGGTTTGGTTGGCGATATTGAAGATGCTGTTGCTTTTGTCATGAACAGAAACCTGAAGCGTCCGGCTCCACAAACTTCAGATGAAATGTGTAC TCATGCTATCGAAACACTTGGGAAAACTGAAGATGTTTTAACTTATATTACAAAGAAACGGTCTCAATGGACCCGACTTGTATCAGCAGTTGACGATAGA GTAGATCGAGCATTAGCCACTTTGAGACCGCAGCAAATTGCAGATCATCGAATGCTCCTTTCATCACTTGGGTGGCCACCAACGCTTAGCTCATTAACCT CGCCAATGCATGATACTGGTAAACCGTCTGAAGCATCAAACCATCTCTTCACAATGCATGGCGACCTCAAGAATAAATATTGTGAAAACTTCCGGGCATT GTGCCGTTTACAAGAGTTGCAGATACGAAGAAAGGGTCGGCAACTTGAGGGCCACAACAGGGAAGTTGCTCTTCACCAGCCACTTTGGGCGGTTGAAGAA CTCGTAAATCCTATCTCAATTGCATGCCAACGGCATTTTCCAAAATGGACTGATAAGCCAGAATTTATCTTTGCACTTGTCTACAAGATTACCAGGGACT ATGTTGACACTATGGATGAATTGCTACAACCTCTGGTTGACGAAGCTAGGTTGGTGGGATATAGCTGTAGAGAAGAATGGATTTCAGCTATGGTTACATC TTTATCTACATACTTGGCAAAAGAGGTTTTCACTAGCTATATCAGCCAACTGGAAGATGAGCATGCTAGTGGTATTGGGTCACAGGCAAGAATGTCATGG CTGCATCTAGTTGACCTAATGATTTCTTTTGATAAACGTGTTGTGTCTCTGGCAACCCATTCTGGGGTTTTGATGTCTGTTGAGGAAGACAAGAACCTCC AGAAAATATCATCTTTATCTATTTTCTGTGACAAACCTGATTGGCTTGATTTGTGGGCAGAAGTCGAGCTAAGTGACACATTTGAGAAGTTAAAAGCTGA GGCGGAGGATGAGCGAACATGGTTAGTTAAAGTTCAGGGGGCAGCTCTTCTATCTGGTCCTGAAAATTACAAGTCTCCTCTAGTTTCGAGTGGCTTCCTC AAGCATCTGTCTTTAGTTATTGATCGATGTCGATCACTGCCTACTACATCTTTGAGGTATAGATTTCTCCGATTAGTTGGTGCACCCATAATACATAGAT TTTTAGACTGTGTGCTACTTAGGTGTCAAGAAGCTGAAGGAATGACTGCACTAGCCGATGATGGCGGTTTAATAAAGGTAGTGAACTCAATCAATGCTGT TCACTACTTTGAGTCTGTAATTAAAGAATGGTGTGAGGATGTGTTCTTTGTCGAGATGGGGTATGCTCAAAACGACCCTGATGGCACAGAGAGTCCAGTT GATTCATGGATGGGTGGGATTTTTGAAGAGGAGATAAGAAAGCTGGAATCTTTCAGGAAGGAGTGGATTGAGAAAGTATCGGTGGTTATTCTGAGGGGAT TCGAAGCTAGGTGTCGCGAATACCTGAAAAACAAGAAGCAATGGCAGGAGAGGAGGGAAGAAGGATGGACGGTGTCCAAAAATTTAGTTGGAAGTCTAGA TTATTTACAGGCAAAACTGGCAGTGGTGGAGGAAAACGTGAACAGTACGGATTTTGTGAGTGTTTGGAGAAGTTTGGCGTCTGGGATCGATGGTGCAATC TTTAATGGCGTAGTTATGAGCAATGTAAAGTTTTACGATAGCGGTGTAAAAAGTTTTAGCAGCGACTTAGAGGTTGTGTTTGGAGTGTTTAGAGGTTGGT GTCTAAGACCACAAGGGTTTTTCCCCAAGATAAGTGAGGGGATGAAGTTGCTGAAGATGGGGAAGAAGCAGTGTGAATTGGGTATAGCAGGAGGTGAGAA ATGGATGAAGGAGAATGGAATTAGGCACATTGGTTTCGGGGAAGTAGAGAGGATACTAAAAAGTCGAGTGTTTCCAAGTTAA
AA sequence Show only first row Show all	>Lus10024240 pacid=23175756 polypeptide=Lus10024240 locus=Lus10024240.g ID=Lus10024240.BGIv1.0 annot-version=v1.0 MTESTLTLPPPAVLSSSVITFLNNRLKDEQDLEQAPDIVSELQSQCVDLDQSLTSLNSTLQSSLLDYASSSDRIHGIVTDTSTKLTDLGSLTSASSSSSD GGLKEQVLAEELPALAKEVARVEIVRAYANTALKLDGLVGDIEDAVAFVMNRNLKRPAPQTSDEMCTHAIETLGKTEDVLTYITKKRSQWTRLVSAVDDR VDRALATLRPQQIADHRMLLSSLGWPPTLSSLTSPMHDTGKPSEASNHLFTMHGDLKNKYCENFRALCRLQELQIRRKGRQLEGHNREVALHQPLWAVEE LVNPISIACQRHFPKWTDKPEFIFALVYKITRDYVDTMDELLQPLVDEARLVGYSCREEWISAMVTSLSTYLAKEVFTSYISQLEDEHASGIGSQARMSW LHLVDLMISFDKRVVSLATHSGVLMSVEEDKNLQKISSLSIFCDKPDWLDLWAEVELSDTFEKLKAEAEDERTWLVKVQGAALLSGPENYKSPLVSSGFL KHLSLVIDRCRSLPTTSLRYRFLRLVGAPIIHRFLDCVLLRCQEAEGMTALADDGGLIKVVNSINAVHYFESVIKEWCEDVFFVEMGYAQNDPDGTESPV DSWMGGIFEEEIRKLESFRKEWIEKVSVVILRGFEARCREYLKNKKQWQERREEGWTVSKNLVGSLDYLQAKLAVVEENVNSTDFVSVWRSLASGIDGAI FNGVVMSNVKFYDSGVKSFSSDLEVVFGVFRGWCLRPQGFFPKISEGMKLLKMGKKQCELGIAGGEKWMKENGIRHIGFGEVERILKSRVFPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47700		MAG2	maigo2, RINT-1 / TIP-1 family ...		Lus10024240 [exp]	0	1
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	2.0	0.8452
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10037313 [exp]	2.8	0.8162
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010063 [exp]	6.9	0.8269
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	7.5	0.8190
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10037143 [exp]	7.7	0.8254
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	8.1	0.8446
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	11.0	0.8273
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	19.5	0.8261
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10005206 [exp]	19.7	0.8057
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10016624 [exp]	20.5	0.7855

Compare expression of checked genes

Lus10024240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.