Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47800 155 / 3e-46 Galactose mutarotase-like superfamily protein (.1) AT3G17940 114 / 9e-31 Galactose mutarotase-like superfamily protein (.1) AT5G15140 111 / 7e-29 Galactose mutarotase-like superfamily protein (.1) AT3G01260 72 / 8e-15 Galactose mutarotase-like superfamily protein (.1) AT3G47780 56 / 2e-09 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) AT3G47760 52 / 3e-08 ATATH4, ABCA5 A. THALIANA ABC2 HOMOLOG 4, ATP-binding cassette A5, ABC2 homolog 4 (.1) AT3G47790 52 / 3e-08 ABCA8, ATATH7 ATP-binding cassette A8, ABC2 homolog 7 (.1) AT5G61740 52 / 5e-08 ABCA10, ATATH14 ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATP-binding cassette A10, ABC2 homolog 14 (.1) AT5G61700 51 / 8e-08 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1) AT3G47770 51 / 1e-07 ATATH5, ABCA6 A. THALIANA ABC2 HOMOLOG 5, ATP-binding cassette A6, ABC2 homolog 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023611 [exp] 237 / 2e-78 AT3G47800 462 / 5e-164 Galactose mutarotase-like superfamily protein (.1) Lus10005251 [exp] 131 / 2e-37 AT5G15140 370 / 2e-126 Galactose mutarotase-like superfamily protein (.1) Lus10015365 [exp] 130 / 2e-36 AT5G15140 403 / 7e-138 Galactose mutarotase-like superfamily protein (.1) Lus10030673 [exp] 131 / 3e-36 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1) Lus10007251 [exp] 129 / 3e-36 AT5G15140 404 / 7e-139 Galactose mutarotase-like superfamily protein (.1) Lus10010976 [exp] 115 / 3e-31 AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) Lus10026181 [exp] 97 / 3e-24 AT3G17940 500 / 3e-179 Galactose mutarotase-like superfamily protein (.1) Lus10000452 [exp] 87 / 8e-21 AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) Lus10023612 [exp] 0 / 1 AT3G47780 1202 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G128800 [exp] 172 / 4e-53 AT3G47800 459 / 1e-162 Galactose mutarotase-like superfamily protein (.1) Potri.017G080000 [exp] 149 / 9e-44 AT5G15140 432 / 3e-150 Galactose mutarotase-like superfamily protein (.1) Potri.017G080200 [exp] 144 / 4e-42 AT3G47800 406 / 9e-142 Galactose mutarotase-like superfamily protein (.1) Potri.004G129700 [exp] 141 / 7e-41 AT3G47800 414 / 5e-145 Galactose mutarotase-like superfamily protein (.1) Potri.017G080100 [exp] 139 / 5e-40 AT3G47800 397 / 3e-138 Galactose mutarotase-like superfamily protein (.1) Potri.012G045875 [exp] 115 / 4e-31 AT3G17940 555 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.017G129300 [exp] 108 / 3e-28 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1) Potri.015G063400 [exp] 59 / 2e-10 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.012G069700 [exp] 59 / 2e-10 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10024242 pacid=23175783 polypeptide=Lus10024242 locus=Lus10024242.g ID=Lus10024242.BGIv1.0 annot-version=v1.0 ATGTCATTTTCTCTGACTTTTGCATCGGGAAAAGGTAGAGCAATTGGTACTAGAACCAAATACAAGTCATGCGATAGTCTGTACAACCTCATAAAGGTGT ATCCAGGGAGGGCTGGGAATCAAGCCAATTTGGCGGTGAAAGGATTATTGCTTGCGCTTCCTCGAGGGGAGTGTTTTGGGAACCTCGGCGGACACAACAG TGGAACCATCCTCAACCACACCATCCATCTCTTCTCCCACCACATCACTCCTGTCAACGACCACCTCATCCCTACCGGATCTTTGACTTCTGTAGAGGGC ACCCCTTACGACTTCCTTGAGCCTCTACAAATCGGTAGCAGGATCGACCGTGATTTCCCCAAAGGGTACGACATTAACTACGTGCTGGATGACCTTTCTC CAGGCCACCTAAAGAAAGCTGCTGTTGTTAAGGATCATGTCTCAGGGAGGAAACTTGAGCTGTGGACTAATCAGCCTGGAGTCCAGTTTTATACTAGCAA TATGTTGAACGATGTCAAGGGGAAAGATGGGTTTACTTATTAG
AA sequence Show only first row Show all	>Lus10024242 pacid=23175783 polypeptide=Lus10024242 locus=Lus10024242.g ID=Lus10024242.BGIv1.0 annot-version=v1.0 MSFSLTFASGKGRAIGTRTKYKSCDSLYNLIKVYPGRAGNQANLAVKGLLLALPRGECFGNLGGHNSGTILNHTIHLFSHHITPVNDHLIPTGSLTSVEG TPYDFLEPLQIGSRIDRDFPKGYDINYVLDDLSPGHLKKAAVVKDHVSGRKLELWTNQPGVQFYTSNMLNDVKGKDGFTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47800			Galactose mutarotase-like supe...		Lus10024242 [exp]	0	1
AT5G51280			DEAD-box protein abstrakt, put...		Lus10012900 [exp]	7.4	0.8496
					Lus10021782 [exp]	11.7	0.8450
					Lus10007927 [exp]	14.4	0.8450
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	16.6	0.8450
					Lus10023587 [exp]	18.6	0.8450
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	20.3	0.8450
AT4G01310			Ribosomal L5P family protein (...		Lus10033169 [exp]	20.8	0.7661
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10039026 [exp]	22.0	0.8450
AT1G48120			hydrolases;protein serine/thre...		Lus10015869 [exp]	23.5	0.8450
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10042202 [exp]	24.9	0.8450

Compare expression of checked genes

Lus10024242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.