Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47780 490 / 4e-163 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) AT3G47750 456 / 7e-150 ATATH3, ABCA4 ATP-binding cassette A4, ATP binding cassette subfamily A4 (.1) AT5G61700 441 / 2e-144 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1) AT3G47790 436 / 1e-142 ABCA8, ATATH7 ATP-binding cassette A8, ABC2 homolog 7 (.1) AT3G47740 436 / 2e-142 ATATH2, ABCA3 A. THALIANA ABC2 HOMOLOG 2, ATP-binding cassette A3, ABC2 homolog 2 (.1) AT3G47770 410 / 1e-132 ATATH5, ABCA6 A. THALIANA ABC2 HOMOLOG 5, ATP-binding cassette A6, ABC2 homolog 5 (.1) AT5G61740 401 / 1e-129 ABCA10, ATATH14 ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATP-binding cassette A10, ABC2 homolog 14 (.1) AT3G47760 401 / 1e-129 ATATH4, ABCA5 A. THALIANA ABC2 HOMOLOG 4, ATP-binding cassette A5, ABC2 homolog 4 (.1) AT2G41700 56 / 7e-08 AtABCA1, ABCA1 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023612 [exp] 933 / 0 AT3G47780 1202 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10023157 [exp] 55 / 2e-07 AT2G41700 1486 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10012755 [exp] 54 / 3e-07 AT2G41700 2655 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063400 [exp] 611 / 0 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.012G069700 [exp] 588 / 0 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.006G049300 [exp] 56 / 7e-08 AT2G41700 2741 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Potri.013G123401 [exp] 0 / 1 AT3G47790 135 / 3e-36 ATP-binding cassette A8, ABC2 homolog 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024243 pacid=23175742 polypeptide=Lus10024243 locus=Lus10024243.g ID=Lus10024243.BGIv1.0 annot-version=v1.0 ATGGCGGAGTCGCAGGCTTCACGGGGTCGTGCAAGTTTCTGTACTCAGGCTGATGCTCTACTTAGAAAGAACTTAACCCATCAGAAACGAAACGCCAAGA CAAATTTTCGTCTCATTTCCTTTCCATTAATCCTTTGTGTTCTCCTTGTTCTTGCTCAAAATCTGGTTAATAATCAGTTAAACAAGGATGACTACAAGTG TGGCTGTGTTTGTAATGGTACAAATGTTGACGGGAAATGTGAGAAAGTGTGTGGACTGCAGTACTCAGATGCGCAACAAGCTGCTGCCTGCCCTGTTCCC AATCCCCCAGAATGGCCTCCCCTTTTGCAAGTTCCCGCACCTCATTTTCGGGCAGTCAAAACTGATTTCCTTCCATTTAATGACTTACCAGATGAGTCTT GCCGGCTTACAGGGACCTGTCCCGTAACTATACTTGTCACCGGAACTAATCAGACCCTTGGAGAAAGCTTGGCTGGAAACATGTTCAGCAGCTCTTCGAC ATTCAACTTCTCGACTGTTGCAGATCTTGTAGCCAACTCTGTATTGGGATCAGATACAAAGACTGAATCCAATAATTTAGTTGACCCTGCTTTTACTGAG AGTTCTCCTCTCTACAATGTGCGACCTCAGACCCAAAGGCCATATGTAAACAACATGCTCCAAGAATGTAACAACAGTCTAGAATCCGAACCTAGTGAAC TAAGAAAGCTTGATGCATTGACCAAGGTGAGATGTGTTCAAGGCCTGCACTTTTGGCTCAATAGTGCATCTGGCATAAATGATGAAATATACAAAGGTTA TTACAATGGAAATTCAGAGAAAATAAATGAGATAATTGCTGCATATGATTTCTTGAATTCTGATGGGAACAGTATGAACATGAACATTTGGTACAACTCG ACTCCTAAGGATGACGGCGGTGGTGGTGCATTCCATTTGCTGCGGGTTCCACGAATTGTCAATTTGGCATCAAATGCATATCTTCAGCTTTTAAAAGGAC CCAGTGCAAGAATGGAACTGGAGTTTGTTAAAGAAATGCCTAAACCTCGAACAGACTTTCGGTTGGATCTCGCATCTGTTCTTGGCACTCTCTTTTTTAC TTGGGTTATTCTACAACTATTTCCTATTAAGGATTATGATGAAAATGCATGGGTGATGGGCCTTATTGGTGATATCATATGCATACTTTTTGCCATCTCT CTGCCGTATATGTTCGTTTTCGTGGCGTTTGGCTCAGTCATAGGCTTGAAATTTTTTACGCTGAATGACTACAGCATCCAATTTGTGTTTTACTTCATCT ATATCAACTTGCAAATTTCCATGGCGTTCCTAGTTGCAGCATTCTTTTCAAATGTTAAAACTGCTACAGTTGTAGCCTACATATGCGTTTTTGGAACTGG ACTTCTAGGTGGCTTCTTTTATCAGTCCTTCCTTGAGGATACGTCATTTCCAAGAGGCTTGCTGATATTGCTGGAGCTGTATCCCAGATTCTCTCTGTAT CTTGGATTATACGAGTTTTCCCAATACTCTAGTGTAGGGGTCGCAAATGGAACCAATGGGATGCGTTGGGAAAATTTGAATGACAGTGGAAATGAGATGA AGGAAGTGTTCACTATTATGACTGTAGAATGGATTGTGCTTCTCTTTGTCACATATTACATTGATCGAGTGTTATCATCTGGGAAAAGTCCTTTATTTTT CTTCAAAACCTTTGGGAAGAAACCATCTGGATCTCTCCGGATGCCTAGTTTGAGAAGGCAGGGATCTAAAGTTTTCGTAAATCTGGAGAAACCTGATGTT GTCCAAGAGGTTGCATTTCCTTTTTGTCTAGTTTGA
AA sequence Show only first row Show all	>Lus10024243 pacid=23175742 polypeptide=Lus10024243 locus=Lus10024243.g ID=Lus10024243.BGIv1.0 annot-version=v1.0 MAESQASRGRASFCTQADALLRKNLTHQKRNAKTNFRLISFPLILCVLLVLAQNLVNNQLNKDDYKCGCVCNGTNVDGKCEKVCGLQYSDAQQAAACPVP NPPEWPPLLQVPAPHFRAVKTDFLPFNDLPDESCRLTGTCPVTILVTGTNQTLGESLAGNMFSSSSTFNFSTVADLVANSVLGSDTKTESNNLVDPAFTE SSPLYNVRPQTQRPYVNNMLQECNNSLESEPSELRKLDALTKVRCVQGLHFWLNSASGINDEIYKGYYNGNSEKINEIIAAYDFLNSDGNSMNMNIWYNS TPKDDGGGGAFHLLRVPRIVNLASNAYLQLLKGPSARMELEFVKEMPKPRTDFRLDLASVLGTLFFTWVILQLFPIKDYDENAWVMGLIGDIICILFAIS LPYMFVFVAFGSVIGLKFFTLNDYSIQFVFYFIYINLQISMAFLVAAFFSNVKTATVVAYICVFGTGLLGGFFYQSFLEDTSFPRGLLILLELYPRFSLY LGLYEFSQYSSVGVANGTNGMRWENLNDSGNEMKEVFTIMTVEWIVLLFVTYYIDRVLSSGKSPLFFFKTFGKKPSGSLRMPSLRRQGSKVFVNLEKPDV VQEVAFPFCLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10024243 [exp]	0	1
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	2.6	0.8033
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Lus10030035 [exp]	5.0	0.7816
AT4G37560			Acetamidase/Formamidase family...		Lus10011529 [exp]	14.9	0.7977
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10023440 [exp]	18.5	0.7402
AT1G52080		AR791	actin binding protein family (...		Lus10038254 [exp]	19.4	0.7676
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	24.2	0.7821
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10011309 [exp]	27.6	0.7880
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	29.1	0.7656
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10037295 [exp]	38.8	0.7521
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027698 [exp]	40.1	0.7780

Compare expression of checked genes

Lus10024243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.