Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47730 1248 / 0 ABCA2, ATATH1 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) AT5G61730 1151 / 0 ABCA9, ATATH11 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1) AT5G61690 1137 / 0 ABCA11, ATATH15 ARABIDOPSIS THALIANA ABC2 HOMOLOG 15, ATP-binding cassette A11, ABC2 homolog 15 (.1) AT2G41700 266 / 2e-73 AtABCA1, ABCA1 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) AT3G47790 254 / 4e-71 ABCA8, ATATH7 ATP-binding cassette A8, ABC2 homolog 7 (.1) AT5G61700 254 / 4e-71 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1) AT3G47780 244 / 1e-67 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) AT5G61740 233 / 3e-64 ABCA10, ATATH14 ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATP-binding cassette A10, ABC2 homolog 14 (.1) AT3G47740 226 / 2e-61 ATATH2, ABCA3 A. THALIANA ABC2 HOMOLOG 2, ATP-binding cassette A3, ABC2 homolog 2 (.1) AT3G47760 222 / 2e-60 ATATH4, ABCA5 A. THALIANA ABC2 HOMOLOG 4, ATP-binding cassette A5, ABC2 homolog 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023613 [exp] 1833 / 0 AT3G47730 1360 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10004262 [exp] 786 / 0 AT3G47730 840 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10042172 [exp] 407 / 1e-130 AT5G61730 449 / 5e-147 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1) Lus10012755 [exp] 253 / 6e-69 AT2G41700 2655 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10023612 [exp] 247 / 2e-68 AT3G47780 1202 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10023157 [exp] 193 / 8e-50 AT2G41700 1486 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10029905 [exp] 96 / 6e-20 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 94 / 3e-19 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10039859 [exp] 89 / 1e-17 AT2G37360 319 / 5e-97 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069800 [exp] 1296 / 0 AT3G47730 1245 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.015G063500 [exp] 1277 / 0 AT3G47730 1288 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.006G049300 [exp] 281 / 3e-78 AT2G41700 2741 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Potri.015G063400 [exp] 251 / 8e-70 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.012G069700 [exp] 249 / 2e-69 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.015G027600 [exp] 99 / 3e-21 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 93 / 4e-19 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 92 / 5e-19 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 89 / 5e-18 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.012G045100 [exp] 89 / 8e-18 AT3G55130 270 / 3e-79 ATP-binding cassette G19, white-brown complex homolog 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10024244 pacid=23175797 polypeptide=Lus10024244 locus=Lus10024244.g ID=Lus10024244.BGIv1.0 annot-version=v1.0 ATGGAATTGAAGAAGGGAATCCCACTACAGTACCAGCAATTCGAAGCGCTGTTCTGGAAGAACTTCCTGCTCTCATGGCGGAACAAGCGCGCCACTTTCC TCCAGCTCTTCTCCTCCTTCTTCTTCATACTCCTCCTCTTCTGCATTCAGAAGGCCATGAATTCTTCAGTGGATTACACCACCGCTTACTCCTCCGTCAG GGACCCGCCTACCGCCTTCTATCCGGCGATTCCTCCCTGCGAGGACAAGTTCTTCATCCGCACTCCTTGCTTCGACTTCCTTTGGAGCGGAAATGACAGC GATTCCATTGGCCGGATTGCTCGCGCCATCATGGCTAATAACCCTGGCCGCCCCATTCCTGACGCTAAGGTGAAATCATTCAGGAATACACTTGAGGTAG ATGCATGGCTGCTAGCTAACCCTATCCGTTCCCCTGGCGCTCTGCACTTCACGGAAGTGAGCAATGCAGTAATAAGGTATGGCATTCAGACTAATTCTTC AGCAGCTGCGAAGCGAGGTCGGAACGAAGACCCCAATTTCAAATTTCAAATTCCGCTTCAGATGGCTGCCGAACGTGAAATTGCCCGATTTGTTATTGGA GATCCCAACTTTAGATGGACGGTGGGACTTACAGAATATGCACATCCAGCAGATGACTTTTTCTCAGCATTGGTTGCAGTTGGTCCTGCCTTTTTCCTTG CATTTGCCATGTTTGGATTTGTGTTGCAAATTACTTCTTTGGTTACAGAGAAGGAGTTGAAGCTTCGTCAGGCCATGAGCACAATGGGTCTTTATGATTC TGCATACTGGTTATCATGGATCACATGGGAGGGAATAATCGCGCTGTTCTCAGCGCTGTTTTTAGTTCTCTTTGGATTAGTGTTCCAGTTTGATTTCTTC AAGAAAAACAGTTTTGCAGTTGTGTTTCTGGTGTTTTTTCTGTTTCAAGTCAATATGGTTGGTCTCGCCTTCATGCTTTCAACCTTCATTAGCAAGGCAT CTTCAGCCACATCAGCAGGATTCTCTTTATTTATCGTCGGGTTTTTCACTCAGGCAAGGTTCCTTTTAGGAGTTTGGCCACTGTTTTTAGCAATTGTTAC CTTATTTGGCTTCCCATATGACCTTAAAACTTCCAAAGCTTTAAGGAATATCTGGTCAATGTTCCCACCCAATCTTCTTGCTCTAGCCGTGAGACAGCTT GCAGATGCGACTAGTACTCCAGAAGATACTGGAATTACATGGAACAGGAGGACAGATTGTGTAACACGTCAAGATTCCTCAACTTGTGCAATGACAATTA ATAAGGTCTACGCATGGCTCCTAGGGACATTTGGTGTATGGATCCTCTTGGCAATCTACTTTGACAATATATTCCCAAATGCGTATGGTGTGAGAAAACC TTTATTTTACTTCCTAAACCCTGGGTACTGGACTGGGAAAGGTGGAAACAAGGTGAAAGAGGGTGGCATCTGTAGCTGCCAGGGTTCAATACCACAAGAG GAGCATATCTCTCCAGATGATGAAGATGTTCTCGAAGAGGAAACAATGGTTAAGAAAGACGCAACAGGAGGCACAATGGACGCAGATGTTGCAGTTCAGA TGCGTGGACTTGCAAAGACATATGCTGGAACCAGGAAAATCGGTTGCTGTAAATGTCAGAAAACCTCACCTTATCATGCCGTTAGGGGCTTATGGATGAA TATAGCCAAGGATCAATTATTTTGTTTACTTGGACCCAATGGAGCTGGGAAAACTACAGCAATCAATTGTTTGACAGGAGTAGCACCAGTGACAAGTGGA GATGCATTGATTTATGGGTATTCAATTAGAAGTTCTGTTGGCATGTCCAACATTCGCAAATTTATGGGAGTTTGCCCCCAGTTTGACATCCTTTGGGATG CATTATCCGGTCAAGAACACCTTCACCTGTTTGCTACCATTAAGGGCTTACCACCAGCATCAGTTAAAATGGTTGTTGAGGAACTACTTGGGAAGGTGAA ACTTACTGATGCAGCTGGTGTAAGAGCCAGGAGCTATAGTGGAGGAATGAAGCGTCGGCTCAGTGTAGCCATAGCCCTCATTGGTGACCCAAAGATTGTC ATTTTGGATGAACCAACCACAGGCATGGATCCTATATCTAGAAGGCAAGTATGGGATGTAATACAAGAAGCTAAAAAAGGGCGGGCAATTATTTTGACTA CACATTCGATGGAAGAAGCCGATGTCTTAGGGGATCGAATCTCAATCATGGCGAAGGGCAGGCTTAGATGCATTGGAACTTCCATCAGGCTGAAGTCGAG ATTTGGGACTGGTTTTGTTACAAACGTTAGCTTTGGTGAAATGGCTGGTGGTCATAGTCCTATAAATCAACCTGTAGATAGTTCTGCTAATCATGAGGCA GTGAAACAGTTTTTCAAAGAGCATTTGGACGCGACACCAACAGAGGAGACCAAGTCCTTTATGACTTTTGTCATTCCTCATGACAGGGAGAAGCTTCTCA CAAGCGTTTTTGCAGAACTTGAAGATAGACAAACAGAACTGGGCATAAGTGATATTCAGCTTGGTCTCGCAACTCTAGAAGAAGTGTTCTTAAATATTGC AAGGCAAGCTGAAGTGGAAAGTGCCACAGCTGAGGGGCGTTTTGTTACTCTAAATTTAACTTCTGGAAACTCACTTGAGATACCAGTAGGAATCAGCTTG GTTGGAATCCCAGGTACAGAATCGAGCGAAAACCCTAGAGGCCTCATGGTGGAAGTGTTCTGGGAGCAAGACGACACAGGTGCTCTTTGTGTATCAGGGC ATTCACCTGAAGTGTCTATACCTCCTGAGGTCCAGCCATCAATGCCTGCAGTTGCAGCCTCAGGAAGCAACTTGTTAGGTAGGAGAGGGCCAGCTTACGG GCTTATTATCGATCCCAGTCAGATTCGGTCAGCTGATCCGAGATGA
AA sequence Show only first row Show all	>Lus10024244 pacid=23175797 polypeptide=Lus10024244 locus=Lus10024244.g ID=Lus10024244.BGIv1.0 annot-version=v1.0 MELKKGIPLQYQQFEALFWKNFLLSWRNKRATFLQLFSSFFFILLLFCIQKAMNSSVDYTTAYSSVRDPPTAFYPAIPPCEDKFFIRTPCFDFLWSGNDS DSIGRIARAIMANNPGRPIPDAKVKSFRNTLEVDAWLLANPIRSPGALHFTEVSNAVIRYGIQTNSSAAAKRGRNEDPNFKFQIPLQMAAEREIARFVIG DPNFRWTVGLTEYAHPADDFFSALVAVGPAFFLAFAMFGFVLQITSLVTEKELKLRQAMSTMGLYDSAYWLSWITWEGIIALFSALFLVLFGLVFQFDFF KKNSFAVVFLVFFLFQVNMVGLAFMLSTFISKASSATSAGFSLFIVGFFTQARFLLGVWPLFLAIVTLFGFPYDLKTSKALRNIWSMFPPNLLALAVRQL ADATSTPEDTGITWNRRTDCVTRQDSSTCAMTINKVYAWLLGTFGVWILLAIYFDNIFPNAYGVRKPLFYFLNPGYWTGKGGNKVKEGGICSCQGSIPQE EHISPDDEDVLEEETMVKKDATGGTMDADVAVQMRGLAKTYAGTRKIGCCKCQKTSPYHAVRGLWMNIAKDQLFCLLGPNGAGKTTAINCLTGVAPVTSG DALIYGYSIRSSVGMSNIRKFMGVCPQFDILWDALSGQEHLHLFATIKGLPPASVKMVVEELLGKVKLTDAAGVRARSYSGGMKRRLSVAIALIGDPKIV ILDEPTTGMDPISRRQVWDVIQEAKKGRAIILTTHSMEEADVLGDRISIMAKGRLRCIGTSIRLKSRFGTGFVTNVSFGEMAGGHSPINQPVDSSANHEA VKQFFKEHLDATPTEETKSFMTFVIPHDREKLLTSVFAELEDRQTELGISDIQLGLATLEEVFLNIARQAEVESATAEGRFVTLNLTSGNSLEIPVGISL VGIPGTESSENPRGLMVEVFWEQDDTGALCVSGHSPEVSIPPEVQPSMPAVAASGSNLLGRRGPAYGLIIDPSQIRSADPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10024244 [exp]	0	1
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10037469 [exp]	1.7	0.8143
AT5G22850			Eukaryotic aspartyl protease f...		Lus10021397 [exp]	5.5	0.7838
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10032798 [exp]	14.3	0.7710
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	14.9	0.7680
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042875 [exp]	19.5	0.7792
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	19.8	0.7017
AT5G55060			unknown protein		Lus10043118 [exp]	20.3	0.7468
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	20.4	0.7404
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Lus10039860 [exp]	23.7	0.7692
					Lus10007724 [exp]	25.5	0.7150

Compare expression of checked genes

Lus10024244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.