Plant FIBer expression Database

Lus10024245 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62550 130 / 6e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023614
[exp]
454 / 6e-161 AT5G62550 131 / 4e-34 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G063700
[exp]
223 / 3e-70 AT5G62550 157 / 1e-43 unknown protein
Potri.016G129250
[exp]
44 / 5e-05 AT5G62550 47 / 3e-06 unknown protein
PFAM info
Representative CDS sequence
>Lus10024245 pacid=23175755 polypeptide=Lus10024245 locus=Lus10024245.g ID=Lus10024245.BGIv1.0 annot-version=v1.0
ATGGATGAAACTACCGTGAAAGAGCAGGAGCAGCAGCAGACTGCAGGATCCACCACCTCTTCCGGGAGTTTCATCGGGAAATCGAAACTTAGGTATCCTC
TGAGATCATCGATGAAGTTGAAGGAGGAGAAACCTCCGGCGGTGGTTGCCGATTCCACGACATCCTCCTCCTCTGTTTCATCCAAGAGGAGAAGGCAGGT
ATCCAGTGTGAGCAAAAGCTTAGGGGTGCTGGAGCTTTCTGCTAAGGAGAAATCTGCCAAGCCTCCTAGAAGACAGTCCATACCTACCAAGACCATCGTA
GGTACTCCATACCCTAAACTGGGCGGGAACAGCACGCCAATATCTGAGACTCGAAGCAAGAGGAACGGTAACGGGCTGGGGAAGAATGAAACACCTCTTT
CTGATGCCTCAAGAACTTCAGTTCGCAGAACTTTCAATAGGATCTCCTCAGCTTCCTACTGGTTGTCACAAATTAAGCTCTCTGAATCTGCAGCCAAACA
CACGGTGTCTCTTGGCTTCTTCAAACTCGCTCTGGAAGCAGGATGTGAGCCTCTTCAACAAATGCGGGATGAGCTGATATCTTATGTGCGGCGGTTTGAG
ATCGGTGAGCTTGAAGAGTCTAAACAACTTTTTGAGAAGTACAATATTTCTGTGTATCCAGAGCAGCAGGTGCAAGTCTCTGTGTACGATTCTCAGGCAA
CTGAAGAGGGATCTCGGTCATCTGAGGAGGATATCAACAACAGTTCTTCCCCAACAGTAGGAACCATGAATCTGAGGCCCAGGTCGTTAAATACAGCTGC
TACTGACGATGGTGGTAAGAAAGAATCAGTGAAGAAAGAAGCTATCGGGAAGAAGAATGCTCCCTCAACCAAAAGTAAAACAGTGCCTTCACTCTCAAGC
AAGGGAACCGGGAATTCCAAGCCTGTTTCAGGGAGTAGTACTAGTAAGGTGCAAAAGAAGGCGCAAAAGCAAATCAAGTCAGAAGCTGGGAAGGAAAAAA
GTCAGGTGAAGAAAGCAGGGAAGAAATCGTCAGCTGAAGAAGGCAAGTGTATAGTGATGAACTAA
AA sequence
>Lus10024245 pacid=23175755 polypeptide=Lus10024245 locus=Lus10024245.g ID=Lus10024245.BGIv1.0 annot-version=v1.0
MDETTVKEQEQQQTAGSTTSSGSFIGKSKLRYPLRSSMKLKEEKPPAVVADSTTSSSSVSSKRRRQVSSVSKSLGVLELSAKEKSAKPPRRQSIPTKTIV
GTPYPKLGGNSTPISETRSKRNGNGLGKNETPLSDASRTSVRRTFNRISSASYWLSQIKLSESAAKHTVSLGFFKLALEAGCEPLQQMRDELISYVRRFE
IGELEESKQLFEKYNISVYPEQQVQVSVYDSQATEEGSRSSEEDINNSSSPTVGTMNLRPRSLNTAATDDGGKKESVKKEAIGKKNAPSTKSKTVPSLSS
KGTGNSKPVSGSSTSKVQKKAQKQIKSEAGKEKSQVKKAGKKSSAEEGKCIVMN

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G62550 unknown protein Lus10024245
[exp]
0 1
AT5G62550 unknown protein Lus10023614
[exp]
1.0 0.9637
AT3G54030 Protein kinase protein with te... Lus10021112
[exp]
2.8 0.8779
AT1G68350 unknown protein Lus10034340
[exp]
3.3 0.8403
AT1G23790 Plant protein of unknown funct... Lus10030619
[exp]
3.9 0.8652
AT5G58160 actin binding (.1) Lus10007447
[exp]
4.9 0.8478
AT5G23720 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, ... Lus10032545
[exp]
6.2 0.8734
AT4G39050 Kinesin motor family protein (... Lus10028790
[exp]
7.1 0.8405
AT5G50150 Protein of Unknown Function (D... Lus10039949
[exp]
8.2 0.8684
AT2G46500 UBDKGAMMA4, ATP... UBIQUITIN-LIKE DOMAIN KINASE G... Lus10001817
[exp]
8.8 0.8604
AT3G58640 Mitogen activated protein kina... Lus10029833
[exp]
13.4 0.8345

Lus10024245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.