Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18850 422 / 5e-146 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023616 [exp] 736 / 0 AT1G18850 454 / 2e-159 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G064300 [exp] 501 / 5e-177 AT1G18850 447 / 9e-157 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024247 pacid=23175741 polypeptide=Lus10024247 locus=Lus10024247.g ID=Lus10024247.BGIv1.0 annot-version=v1.0 ATGGCAATTCGAGGAGCGTTTCTGTTCGCTCAACATTACTGCCTTCAACCATTTACACTCCTATCTCTGGTCTGCATGCTTCGCGTCTCACGACGGGATA GTTCTGCCCATCCAGTGACATATGAAGCTTTACATTACCCCGACGTTACTGATAAATGTCTTAATAGCTTTGCATTTGCAGTTTCTGCCATGTCGTTGTT GGAAGCGATTATGAAGGCTGCAACTAACCCTAAAGATGCTGCGGCATTATCCGACTACCCAATGATTCTGAACCCTGATGATACTTTGGCTACTTTGAAG CCTCAGCTTGAAACCCTAGACGCCACTGTGCTTGTCAGTCCTATATCCGGGTGGCAACTCTCCCAAACCGATTCCCAGCTCATTGACCTGACCAAGAAGT TCTATTCCAAACTAAAGAGGAAGCTTAAGGACACCAATCGTTTCAGTAAAGATGAGTTCTTTGACATGTTTAAGGCTTTCCTTGAGCAGATTAGGGAGAA ATCTGGGATCTCTGTAGCTGTTGATTCCTCCGATGATCATTATGTTTCTGCATTGCTCCGGAAGATAGGGGTTCTGGTGGGCCAAGATGTGGCAGGTTTG GTGTTGGAAGCTTGTGTCAGTTTTGAGAAATGGGACATTGTGGAGACCATGATTGTTGATCGGATTGTCACTTATTCCTCTTATTCAAGCTTAGTCGAGA GTCTGATTGTGAAAAGGAAGTCTGATCTTCTTTGCTTATGTATAAAACACGCCACTAACCTCGGTCACTCTGAATTGCTCGGTATTATGAAGTATTTCCT GTGCCCTTCAAAAGATGCCTACGACAGCATGGCAGATGTCAGGAAAGAATGGGAAAGCCAAGCATTGGCAGCTATCGAGAAAGCAAGTGACAAGAGCTTA TCTGAAAAGAGATTGAGACTGGCGAAAGAGGCTGCAGTTTTGCTTATGGTTGCTCATGATGGCTTCTCGACTTCTGAACTCTGTCTGCATTACTTGTTAG CCTCATCGAATATTGATGAAGTAGTTATGTCGTCGGCGATTGGGAAGCTGAGTGGTAGGGAGGTGATGAGCTTGATAAGGTACTTGAGGAAATGGTTGAA CAAGTATGAAAGATTTGCCCAGGCGGTACCTTGCTCGAAAGCTTCTAGTACATTCGGATTAAAAGCTTGTGATTGGGTTCCTAAAGTCGAGGATATCGCC AGATGTTTTGGGTTGGTAGTGGATGAAAACTTCTCCACTTTGATATTGCACACAGAGTTTCATGAAGAGCTGAAAAGGATAATGGGGTATGTTAGCTCTC TTGTATCTGAAGCTTCACTCTGTTGTTCTGTTGCGAATGTGATTGACAGTTTAAGAAGTGAAACTAAAGGTGAGCAAAATTAG
AA sequence Show only first row Show all	>Lus10024247 pacid=23175741 polypeptide=Lus10024247 locus=Lus10024247.g ID=Lus10024247.BGIv1.0 annot-version=v1.0 MAIRGAFLFAQHYCLQPFTLLSLVCMLRVSRRDSSAHPVTYEALHYPDVTDKCLNSFAFAVSAMSLLEAIMKAATNPKDAAALSDYPMILNPDDTLATLK PQLETLDATVLVSPISGWQLSQTDSQLIDLTKKFYSKLKRKLKDTNRFSKDEFFDMFKAFLEQIREKSGISVAVDSSDDHYVSALLRKIGVLVGQDVAGL VLEACVSFEKWDIVETMIVDRIVTYSSYSSLVESLIVKRKSDLLCLCIKHATNLGHSELLGIMKYFLCPSKDAYDSMADVRKEWESQALAAIEKASDKSL SEKRLRLAKEAAVLLMVAHDGFSTSELCLHYLLASSNIDEVVMSSAIGKLSGREVMSLIRYLRKWLNKYERFAQAVPCSKASSTFGLKACDWVPKVEDIA RCFGLVVDENFSTLILHTEFHEELKRIMGYVSSLVSEASLCCSVANVIDSLRSETKGEQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18850			unknown protein		Lus10024247 [exp]	0	1
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	1.0	0.8733
AT3G15970			NUP50 (Nucleoporin 50 kDa) pro...		Lus10037931 [exp]	3.5	0.7998
AT3G13230			RNA-binding KH domain-containi...		Lus10008345 [exp]	3.9	0.7803
AT3G13230			RNA-binding KH domain-containi...		Lus10027099 [exp]	9.5	0.7436
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	12.6	0.7385
AT5G41190			unknown protein		Lus10008488 [exp]	13.4	0.7710
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	16.4	0.6798
AT1G18850			unknown protein		Lus10023616 [exp]	17.0	0.7335
AT3G16840			P-loop containing nucleoside t...		Lus10004404 [exp]	17.5	0.7468
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10041456 [exp]	21.2	0.6834

Compare expression of checked genes

Lus10024247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.