Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74700 433 / 1e-154 NUZ, TRZ1 tRNAse Z1 (.1) AT2G04530 302 / 7e-102 CPZ, TRZ2 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023618 [exp] 597 / 0 AT1G74700 437 / 3e-156 tRNAse Z1 (.1) Lus10014623 [exp] 326 / 5e-111 AT2G04530 543 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10033809 [exp] 325 / 9e-111 AT2G04530 540 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G064400 [exp] 457 / 8e-164 AT1G74700 462 / 4e-166 tRNAse Z1 (.1) Potri.014G160600 [exp] 331 / 6e-113 AT2G04530 528 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.010G106200 [exp] 44 / 0.0002 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024249 pacid=23175762 polypeptide=Lus10024249 locus=Lus10024249.g ID=Lus10024249.BGIv1.0 annot-version=v1.0 ATGGAAGAAACCACCAGTTGCAGCTCTGATTCAACGCTCAGACCTGATGAGTCAGTGCCCACCAACAAGAAAGTCAAGAAGAAACCAGCGATGATTATAG AAGGATACCCCATTGAAGGATTGTCGATTGCAGGCCTGGAAACTTGCATAATATTCCCTTCGATGAACTTGGCTTTCGATATTGGGCGGTGCCCTCAACG GGCAATCTCTCAAGACTTCCTCTTCATCTCCCATGCCCACATGGATCACATTGGAGGGTTGCCAATGTATGTTGCTACCCGTGGCCTAAACCGAATGAAG CCTCCGACAATCATTGTGCCAACCTGCATCAAAGAAACGGTTGAAAAGCTTTTTGATGTGCATCGAGAGTTGGATGGATCAGAGCTGCCGCATAAACTTG TTGGTTTAGATGTAGGGGAGGAGATTTACATAAGACGGGACCTTAAAGTTAAAGCATTCAGGACATACCATAGAGTAAGGAGCCAGGGTTATGTCCTCTA CCAAGTAAAAGAAAAACTTAAACAAGAATATCATTGCTTATCCAGCAATGAGATAAAGAACTTGAAGTTATCGGGTGTAAAGATAACAGACACTGCGACT CACCCAGAGATTGCTTTTACGGGTGACACAATGTCTGACTTTATTATGGATGAGAGTAATATTGACGTTCTGAAGGCAAAGATTCTTATTATGGAGTGTA CTTTTGTTGAGGACAGGGTAACTGTGGAGCATGCCCGAGAATATGGTCATACACATCTCTTCGAGATAATCAAGCACGCAGAAAAATTTCAGAACAGAGC AATCCTTATGATCCATTTTTCAGCTCGATACACTGTAGAGGAGATTGAAGAAGCATTATCAAAACTTGAAGCACCTTTGGCTGGTCGAGTTTCTGCACTC TTACAAGGTATATGA
AA sequence Show only first row Show all	>Lus10024249 pacid=23175762 polypeptide=Lus10024249 locus=Lus10024249.g ID=Lus10024249.BGIv1.0 annot-version=v1.0 MEETTSCSSDSTLRPDESVPTNKKVKKKPAMIIEGYPIEGLSIAGLETCIIFPSMNLAFDIGRCPQRAISQDFLFISHAHMDHIGGLPMYVATRGLNRMK PPTIIVPTCIKETVEKLFDVHRELDGSELPHKLVGLDVGEEIYIRRDLKVKAFRTYHRVRSQGYVLYQVKEKLKQEYHCLSSNEIKNLKLSGVKITDTAT HPEIAFTGDTMSDFIMDESNIDVLKAKILIMECTFVEDRVTVEHAREYGHTHLFEIIKHAEKFQNRAILMIHFSARYTVEEIEEALSKLEAPLAGRVSAL LQGI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74700		NUZ, TRZ1	tRNAse Z1 (.1)		Lus10024249 [exp]	0	1
AT5G12900			unknown protein		Lus10031820 [exp]	1.7	0.8000
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10038824 [exp]	6.6	0.8198
AT5G25800			Polynucleotidyl transferase, r...		Lus10042779 [exp]	11.7	0.8078
AT5G36260			Eukaryotic aspartyl protease f...		Lus10027001 [exp]	13.0	0.7783
AT1G14020			O-fucosyltransferase family pr...		Lus10036785 [exp]	22.4	0.7483
AT5G50840			unknown protein		Lus10040383 [exp]	31.8	0.7887
AT1G03687			DTW domain-containing protein ...		Lus10039823 [exp]	37.8	0.7543
AT5G11640			Thioredoxin superfamily protei...		Lus10011619 [exp]	46.4	0.7162
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001923 [exp]	53.6	0.7591
AT4G00290			Mechanosensitive ion channel p...		Lus10018822 [exp]	56.2	0.7384

Compare expression of checked genes

Lus10024249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.